1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
ATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTATGCCAGAGGTTTTGGTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTGgtataaaaataattctaggattgtttttttcccctcagctgctggagctaaaatattttattgtaacagaagattttccagtgcttctgtgcttgtgcttgaactaattcagctttatactgatcatcag
species | Oryza sativa |
transcript | LOC_Os10g35960.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTG GTCAGGAAAGTGAAGCCTCATGTGCTTTTAGGACTTTCTGGAGTTGGGGGCEST: gi|58673493|gb|CK062179.1|CK062179
genomic: GTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTGgtataaaaat ... tgatcatcagGTCAGGAAAGTGAAGCCTCATGTGCTTTTAGGACTTTCTGGAGTTGGGGGC
EST: GTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTG GTCAGGAAAGTGAAGCCTCATGTGCTTTTAGGACTTTCTGGAGTTGGGGGCEST: gi|58601869|gb|CK012397.1|CK012397
genomic: GTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTGgtataaaaat ... tgatcatcagGTCAGGAAAGTGAAGCCTCATGTGCTTTTAGGACTTTCTGGAGTTGGGGGC
EST: GTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTG GTCAGGAAAGTGAAGCCTCATGTGCTTGTAGGACTTTCTGGAGTTGGGGGCEST: gi|29662805|gb|CB659080.1|CB659080
genomic: GTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTGgtataaaaat ... tgatcatcagGTCAGGAAAGTGAAGCCTCATGTGCTTTTAGGACTTTCTGGAGTTGGGGGC
EST: GTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTG GTCAGGAAAGTGAAGCCTCATGTGCTTTTAGGACTTTCTGGAGTTGGGGGC
genomic: GTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTGgtataaaaat ... tgatcatcagGTCAGGAAAGTGAAGCCTCATGTGCTTTTAGGACTTTCTGGAGTTGGGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTATGCCAGAGGTTTTGGTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTGgtataaaaataattctaggattgtttttttcccctcagctgctggagctaaaatattttattgtaacagaagattttccagtgcttctgtgcttgtgcttgaactaattcagctttatactgatcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG