1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACCCGGACATGCTGGAGGTTGGCAATGGCGGGATGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaaatgtgacggatgtcggataatgatggtattcgtttctactaaagatgacgatgaaaatagtgtaaagaaaaaaagaaagttatcatcggt...
species | Oryza sativa |
transcript | LOC_Os10g35070.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|86495134|gb|CI137767.1|CI137767
genomic: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|86494558|gb|CI137191.1|CI137191
genomic: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|29636610|gb|CB641619.1|CB641619
genomic: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|218485187|gb|FG948602.1|FG948602
genomic: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|86492659|gb|CI135292.1|CI135292
genomic: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|87028082|gb|CI257242.1|CI257242
genomic: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: CGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|218491995|gb|FG964383.1|FG964383
genomic: CGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: TGACCAACGACGAGTAC-TCGTCCATTTCAGCCTCTGGGC-ATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|87007083|gb|CI277158.1|CI277158
genomic: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|86502730|gb|CI145363.1|CI145363
genomic: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: CGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|112785532|gb|EE590887.1|EE590887
genomic: CGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|86493677|gb|CI136310.1|CI136310
genomic: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACEST: gi|86496055|gb|CI138688.1|CI138688
genomic: TGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
EST: GCCTCTGGGCCATCTCCAAG GCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
genomic: GCCTCTGGGCCATCTCCAAGgtactaccaa ... aattggtcagGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCGGACATGCTGGAGGTTGGCAATGGCGGGATGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaaatgtgacggatgtcggataatgatggtattcgtttctactaaagatgacgatgaaaatagtgtaaagaaaaaaagaaagttatcatcggt
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