1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TGTAATTGATTGTGGCAAAGCAAAGGAAACAAGTTATGATGCCTTAAATAAGCTTGCATGCCTTCTACCATCATGGATATCAAAAGCTTCTGCCCATCAGgtacactgtcacagtttatggaaagttgaaaaatccaacaatagatgtactaaatggattttggttatgttacacag
species | Oryza sativa |
transcript | LOC_Os10g33275.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCTTGCATGCCTTCTACCATCATGGATATCAAAAGCTTCTGCCCATCAG AGGCGAGGTCGTGCAGGGGGTGTTCAGCCTGGTGCTTGCTATAGGCTGTAEST: gi|58600773|gb|CK011301.1|CK011301
genomic: AGCTTGCATGCCTTCTACCATCATGGATATCAAAAGCTTCTGCCCATCAGgtacactgtc ... tgttacacagAGGCGAGGTCGTGCAGGACGTGTTCAGCCTGGTGCTTGCTATAGGCTGTA
EST: AGCTTGCATGCCTTCTACCATCATGGATATCAAAAGCTTCTGCCCATCAG AGGCGAGGTCGTGCAGGACGTGTTCAGCCTGGTGCTTGCTATAGGCTGTATEST: gi|112786422|gb|EE590731.1|EE590731
genomic: AGCTTGCATGCCTTCTACCATCATGGATATCAAAAGCTTCTGCCCATCAGgtacactgtc ... tgttacacagAGGCGAGGTCGTGCAGGACGTGTTCAGCCTGGTGCTTGCTATAGGCTGTAT
EST: AGCTTGCATGCCTTCTACCATCATGGATATCAAAAGCTTCTGCCCATCAG AGGCGAGGTCGTGCAGGACGTGTTCAGCCTGGTGCTTGCTATAGGCTGTAT
genomic: AGCTTGCATGCCTTCTACCATCATGGATATCAAAAGCTTCTGCCCATCAGgtacactgtc ... tgttacacagAGGCGAGGTCGTGCAGGACGTGTTCAGCCTGGTGCTTGCTATAGGCTGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAATTGATTGTGGCAAAGCAAAGGAAACAAGTTATGATGCCTTAAATAAGCTTGCATGCCTTCTACCATCATGGATATCAAAAGCTTCTGCCCATCAGgtacactgtcacagtttatggaaagttgaaaaatccaacaatagatgtactaaatggattttggttatgttacacag
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