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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCATTGGAATGGATGTTGCTGCTTCGGAATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggcaatctgtttcatttttgatagtagggattggctcactgtttgatatcatgtagatgtatataatgctgtgaacttattgggaacatttgtgattctttttgttgtag

Basic information

species Oryza sativa
transcript LOC_Os10g08550.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g08550.5 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G048371_T01 (Zea mays), 5'ss of exon 12
GTTGTCATTGGAATGGATGTTGCTGCTTCGGAATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggcaatctgtttcatttttgatagtagggattggctcactgtttgatatcatgtagatgtatataatgctgtgaacttattgggaacatttgtgattctttttgttgtag
|||||||| ||||||||||||||||||||||| || |||| |||||||||| ||||||||||||| ||||| |||||||||||||         |||||  ||| ||  |  | |  ||     |||         |||||   |   || ||   | ||   || |||                            
GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccat----tgttttctttctgtgaacaag--ttaataaacttgccaga--catgtccctaacta-aacattctgttttttttgtag-------------------------

upper sequence: LOC_Os10g08550.5 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA16G32960.1 (Glycine max), 5'ss of exon 11
GTTGTCATTGGAATGGATGTTGCTGCTTCGGAATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggcaatctgtttcatttttgatagtagggattggctcactgtttgatatcatgtagatgtatataatgctgtgaact-tattgggaacatttgtgattctttttgttgtag
||||| ||||| ||||||||||||||||| ||||| ||| || ||||||| |||||||||||| | || || ||||| ||||| |     |||  |   ||||||   |  |     |||  |     |||  | ||| || ||  |||||     ||| |  |   ||    | ||   ||| |   ||  ||| ||
GTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgaca--aattagaaacattttcccttttttcttttgaattttcatttt-tctca-gttgagatatatttctttgtcagatgctttaactagataactgactacctt-attgcag

upper sequence: LOC_Os10g08550.5 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA09G28100.1 (Glycine max), 5'ss of exon 11
GTTGTCATTGGAATGGATGTTGCTGCTTCGGAATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggcaatctgtttcatttttgatagtagggattggctcactgtttgatatcatgtagatgtatataatgctgtgaacttattgggaacatttgtgattctttttgttgtag
||||| ||||| ||||||||||||||||| ||||| ||  || |||||||||||||||||||| | || || ||||| |||||   || |||  |       ||||   | |     ||   |     |||     | |  |||| ||| |  |  |   ||    ||    | ||   ||| |   ||  ||| ||
GTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTATGATAACAAGGACAAAACCTATGACTTGAATTTTAAGGAAGAGgt---tgacaacttagaaacattttcccaatttttcttaaattttcattttgctccgttgagatatat-ttctttttcaaatgctttaactagataactgactacatt-attgcag

upper sequence: LOC_Os10g08550.5 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv16s0022g01770.t01 (Vitis vinifera), 5'ss of exon 11
GTTGTCATTGGAATGGATGTTGCTGCTTCGGAATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggcaatctgtttcatttttgatagtagggattggctcactgtttgatatcatgtagatgtatataatgctgtgaacttattgggaacat-ttgtgat-tctttttgttgtag
||||| ||||| ||||||||||||||||| || |||||  || ||||||| || ||||||||| | || |||||||| |||||||    ||||    |  ||  |             |  ||   |     || | |   |   ||  ||  | |||   |  | | |||   || ||||  | | ||||     |||
GTTGTAATTGGGATGGATGTTGCTGCTTCAGAGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtag----caattgactctatcctc------------taacttcttaaggaattttactcaatagtgcatggt-ctg-agatatgtcgggtttatgttgtcctgttttttcacaatag

upper sequence: LOC_Os10g08550.5 (Oryza sativa), 5'ss of exon 11
lower sequence: EFJ32861 (Selaginella moellendorffii), 5'ss of exon 9
GTTGTCATTGGAATGGATGTTGCTGCTTCGGAATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggcaatctgtttcatttttgatagtagggattggctcactgtttgatatcatgtagatgtatataatgctgtgaacttattgggaacatttgtgattctttttgttgtag
||| ||||||| |||||||||||||| || || || ||||| || ||||||||    || || ||||||||||||||||||||| |     || |    | |||| || |   ||  ||| || | ||  | | || |                                                           
GTTCTCATTGGTATGGATGTTGCTGCATCCGAGTTTTACAACGAAAAGGACAAGCAGTACGATCTTAACTTCAAGGAGGAGgtatg-----attttcaacgttttggaaat--ggttttgactaattgcctaa-atgacag--------------------------------------------------------

upper sequence: LOC_Os10g08550.5 (Oryza sativa), 5'ss of exon 11
lower sequence: EFJ14601 (Selaginella moellendorffii), 5'ss of exon 9
GTTGTCATTGGAATGGATGTTGCTGCTTCGGAATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggcaatctgtttcatttttgatagtagggattggctcactgtttgatatcatgtagatgtatataatgctgtgaacttattgggaacatttgtgattctttttgttgtag
||| ||||||| |||||||||||||| || || || ||||| || ||||||||    || |||||||||||||||||||| ||| |     || |    | |||| || |   ||  ||| || | ||  | | || |                                                           
GTTCTCATTGGTATGGATGTTGCTGCATCCGAGTTTTACAACGAAAAGGACAAGCAGTACGACCTTAACTTCAAGGAGGAAgtatg-----attttcaacgttttggaaat--ggttttgactaattgcctaa-atgacag--------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29639494|gb|CB644503.1|CB644503
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|58597616|gb|CK008144.1|CK008144
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|58689303|gb|CK077990.1|CK077990
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|58675782|gb|CK064469.1|CK064469
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29688336|gb|CB684611.1|CB684611
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|319908690|gb|HS977818.1|HS977818
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|33676058|gb|CF304297.1|CF304297
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|33687081|gb|CF315320.1|CF315320
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATTTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29682710|gb|CB678985.1|CB678985
EST:     ACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCTTGAAGAATGTATAC
genomic: ACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|319908492|gb|HS977620.1|HS977620
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|33674962|gb|CF303201.1|CF303201
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|428072|gb|D24220.1|D24220
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29688337|gb|CB684612.1|CB684612
EST:     AATTCTACAATGACAAGGACAAAACTTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29682744|gb|CB679019.1|CB679019
EST:     ATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: ATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|218500949|gb|FG958836.1|FG958836
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29665470|gb|CB661745.1|CB661745
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29667980|gb|CB664255.1|CB664255
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|396941266|gb|HO188475.1|HO188475
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29678863|gb|CB675138.1|CB675138
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|58606067|gb|CK034100.1|CK034100
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTG
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTG
EST: gi|29665471|gb|CB661746.1|CB661746
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|33676198|gb|CF304437.1|CF304437
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29668592|gb|CB664867.1|CB664867
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTGACTTCAAAGAGGAG                         AACAATGATGGTTCA
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCA
EST: gi|29626887|gb|CB631898.1|CB631898
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29681677|gb|CB677952.1|CB677952
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACTATGATGGTTCACAAGAGATATCTGGTGAT
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGAT
EST: gi|319908681|gb|HS977809.1|HS977809
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|2312016|gb|C28171.1|C28171
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|58673278|gb|CK061964.1|CK061964
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|58683046|gb|CK071733.1|CK071733
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29659231|gb|CB655506.1|CB655506
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|33676308|gb|CF304547.1|CF304547
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29664967|gb|CB661242.1|CB661242
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|33685910|gb|CF314149.1|CF314149
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29659230|gb|CB655505.1|CB655505
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|14192326|gb|AU184537.1|AU184537
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|33676730|gb|CF304969.1|CF304969
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAA-GTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|88401721|gb|CI591048.1|CI591048
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|218483031|gb|FG953128.1|FG953128
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|58662604|gb|CK051290.1|CK051290
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29664966|gb|CB661241.1|CB661241
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29668023|gb|CB664298.1|CB664298
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29644082|gb|CB649089.1|CB649089
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|29659075|gb|CB655350.1|CB655350
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|58592547|gb|CF990855.1|CF990855
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
EST: gi|319908667|gb|HS977795.1|HS977795
EST:     AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAG                         AACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC
genomic: AATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 457

GTTGTCATTGGAATGGATGTTGCTGCTTCGGAATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggca ... tttgttgtagAACAATGATGGTTCACAAAAGATATCTGGTGATAGCCTGAAGAATGTATACAAGTCATTTGTCAGTGAATACCCCATTGTCTCGATTGAGGATCCGTTTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTCATTGGAATGGATGTTGCTGCTTCGGAATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggcaatctgtttcatttttgatagtagggattggctcactgtttgatatcatgtagatgtatataatgctgtgaacttattgggaacatttgtgattctttttgttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG