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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaagattcaattactttgcttttatgttattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcag

Basic information

species Oryza sativa
transcript LOC_Os09g26880.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g26880.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G382159_T01 (Zea mays), 5'ss of exon 2
GGGAAACTTTGTTCAGC--CAACAATTGT-GGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaagattcaattactttgcttttatgttattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcag
   ||| | ||   ||       |  ||  ||||||| |||  |||||||| ||||||| |||||||| |||||||||||| |||||||| |||||| ||||||||  | | | |  | || | || |||| |  ||||      |  | | || | | | || || | |   | || |     |  | || | ||  |  ||| |||    || ||| |||
---AAAATGTGACAAGTATTTTTACCTGGAGGAAATTACACGTTCTGCACCAGTTGTGAAAGAAGAACCCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatatagttcaatattatgttttttttgtatt------ttgtatctgttctaatttctacaatagagaactactgtgtc-ttatatccatgaggttt-gtg----tttcctacag

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G070514_T02 (Zea mays), 5'ss of exon 4
GGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaagattcaattactttgcttttatgttattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcag
 ||||||||||| || |||||||||||||||||| |||  |||||||| ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||  | | | |  | || | || |||| |     |  | | |  | | || | | | || || | |   | || |    ||  | || | ||  |  ||| |||    || ||| |||
AGGAAACTTTGTGCAACCAACAATTGTGGAAATTACACGTTCTGCACCAGTTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatatagttcaatattatgttttttt-----ttgtattttgtatctgttctaatttctacaattgagaactactgtatc-taatatccatgaggttt-gtg----tttcctacag

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G130440_T02 (Zea mays), 5'ss of exon 11
GGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaagattcaattactttgcttttatgt--tattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcag
 ||||||||||| || |||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||  | | | |  | || | || |||| |||  | || | ||||  |  ||  |  || |||   |    ||  ||  ||    || |  |    |  ||      |             
AGGAAACTTTGTGCAACCAACAATTGTGGAAATTACACCTTCTGCACCAGTTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatatagttcaatattatgtttttttgtattttttacctgttctaatttcta-caattgagaaccactgtgcctaatatccatgaggtttg-tgtttcctacag-------------

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM5G820733_T02 (Zea mays), 5'ss of exon 3
GGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaagattcaattactttgcttttatgttattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcag
 ||||||||||| || ||||||||| |||||||| |||  |||||||| ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||  | | | |  | || | || |||| |     |  | | |  | | || | | | || || | |   | || |     |  | || | ||  |  ||| |||    || ||| |||
AGGAAACTTTGTGCAACCAACAATTATGGAAATTACACGTTCTGCACCAGTTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatatagttcaatattatgttttttt-----ttgtattttgtatctgttctaatttctacaattgagaactactgtgtc-taatatccatgaggttt-gtg----tttcctacag

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA15G19670.1 (Glycine max), 5'ss of exon 11
GGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaagattcaattactttgcttttatgttattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatc-atttacactacttttcgtggtcattacctgcag
 ||||| ||||| || ||||||||||| || ||||| |||  ||| || || || | ||||||| | |||||||| ||||| ||||| |||||| ||||||||  | | |||| ||  |||        | | ||||  || |    ||||| ||    | |||  |  || ||   || ||| || | |||                            
AGGAAATTTTGTACAACCAACAATTGTTGAGATTTCTCCCGATGCTCCTGTAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatatattctatatcttc-------tttcattggactatttattttggagtttaatttatgat--tgaacttcatgattttctacttag---------------------------

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 5'ss of exon 11
GGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgta--taaaagattcaattactttgcttttatgttattgatctgtaatgtttggtg-tcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcag
|||||| ||||| ||||||||||| || || ||||| ||   |||  | || || |  |||||| | || ||||| |||||||||||||||||| ||||||||        ||    | ||| | | |   | ||  || ||| |     ||  || |||    |||  | |       |   | |    |||   |                         
GGGAAATTTTGTGCAGCCAACAATCGTTGAGATTTCTCCAAATGCCTCTGTAGTTAAGGAAGAATTGTTCGGTCCAGTTCTTTATGTGATGAAATTTCAGgtagtctgttaatgatgtcactct-cctccctcttggtggtctatttctcttcctgatcaaacttatcttttcatgtttggaaactcctctttgtgcag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33364555|gb|BP432941.1|BP432941
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29669203|gb|CB665478.1|CB665478
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29655856|gb|CB652131.1|CB652131
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29674835|gb|CB671110.1|CB671110
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29668656|gb|CB664931.1|CB664931
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|3462549|gb|AF074787.1|AF074787
EST:     TTGTGAGAGAAG-ACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29638872|gb|CB643881.1|CB643881
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29665769|gb|CB662044.1|CB662044
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29664946|gb|CB661221.1|CB661221
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29670253|gb|CB666528.1|CB666528
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29619465|gb|CB624477.1|CB624477
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29617472|gb|CB622484.1|CB622484
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29670275|gb|CB666550.1|CB666550
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29663941|gb|CB660216.1|CB660216
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|58695697|gb|CK084384.1|CK084384
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29663938|gb|CB660213.1|CB660213
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29629464|gb|CB634473.1|CB634473
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29656048|gb|CB652323.1|CB652323
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29664016|gb|CB660291.1|CB660291
EST:     GTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: GTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29639263|gb|CB644272.1|CB644272
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29673830|gb|CB670105.1|CB670105
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29613124|gb|CB618137.1|CB618137
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29663977|gb|CB660252.1|CB660252
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29628533|gb|CB633544.1|CB633544
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29663978|gb|CB660253.1|CB660253
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|88976985|gb|CI257681.1|CI257681
EST:     GAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: GAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29677489|gb|CB673764.1|CB673764
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29656046|gb|CB652321.1|CB652321
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29612883|gb|CB617896.1|CB617896
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|58691415|gb|CK080102.1|CK080102
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29668605|gb|CB664880.1|CB664880
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29667911|gb|CB664186.1|CB664186
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29623916|gb|CB628927.1|CB628927
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29667685|gb|CB663960.1|CB663960
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29628522|gb|CB633533.1|CB633533
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29664485|gb|CB660760.1|CB660760
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|33683879|gb|CF312118.1|CF312118
EST:     GTTCTTTATGTGATGAAAGTTCAG                         AATCTGGAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: GTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29673253|gb|CB669528.1|CB669528
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29672296|gb|CB668571.1|CB668571
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29668614|gb|CB664889.1|CB664889
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: gi|29663939|gb|CB660214.1|CB660214
EST:     TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG                         AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaagattcaattactttgcttttatgttattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcag

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