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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTACTGCAAAAATCAAATGCAACTGATGCATCAGGAAATGTAATACTTAGTGACTTTGGTGTCCACATGCAACAGAAGgtatgttttcatcttaaaccccctcgggcaaacagattttgcatttagcatcttctattattattattattatttttagaaacacaatacaaacgcaggc...

Basic information

species Oryza sativa
transcript LOC_Os09g24910.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g24910.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G127717_T01 (Zea mays), 5'ss of exon 12
GATTTACTGCAAAAATCAAATGCAACTGATGCATCAGGAAATGTAATACTTAGTGACTTTGGTGTCCACATGCAACAGAAGgtatgttttcatcttaaaccccctcgggcaaacagattttgcatttagcatcttctattattattattattatttttagaaacacaatacaaacgcaggc------
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||| | ||    ||||| ||| |  |  ||| |||||||| |  |||||||||  |   |   ||| |    | | |   | | | |||| | | |         
GATTTACTGCAAAAATCAAATGCAACTGACGCTTCAGGAAATGTGATACTTAGTGACTTTGGTGTCCACATGCAGCAGAAGgtatctcttg---ttaaatcccttgtg--aaatagattttgtacatagcatctttgaaggtctgtat-aagggtataaactatatagtacatatgaaattatagac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86838031|gb|CI343299.1|CI343299
EST:     GGTGTCCACATGCAACAGAAG                         ATTAAGAGTCATTTCAAGGACATCGGTGTTCCAGCTGATGTAAAATACATT
genomic: GGTGTCCACATGCAACAGAAGgtatgttttc ... cgaattccagATTAAGAGTCATTTCAAGGACATCGGTGTTCCAGCTGATGTAAAATACATT
EST: gi|86493701|gb|CI136334.1|CI136334
EST:     CATCAGGAAATGTAATACTTAGTGACTTTGGTGTCCACATGCAACAGAAG                         ATTAAGAGTCATTTCAAGGACATCGGTGTTCCAGCTGATGTAAAATACATT
genomic: CATCAGGAAATGTAATACTTAGTGACTTTGGTGTCCACATGCAACAGAAGgtatgttttc ... cgaattccagATTAAGAGTCATTTCAAGGACATCGGTGTTCCAGCTGATGTAAAATACATT
EST: gi|86884674|gb|CI313053.1|CI313053
EST:     AATACTTAGTGACTTTGGTGTCCACATGCAACAGAAG                         ATTAAGAGTCATTTCAA-GACATCGGTGTTCCAGCTGATGTAAAATACATT
genomic: AATACTTAGTGACTTTGGTGTCCACATGCAACAGAAGgtatgttttc ... cgaattccagATTAAGAGTCATTTCAAGGACATCGGTGTTCCAGCTGATGTAAAATACATT
EST: gi|86504245|gb|CI146878.1|CI146878
EST:     CATCAGGAAATGTAATACTTAGTGACTTTGGTGTCCACATGCAACAGAAG                         ATTAAGAGTCATTTCAAGGACATCGGTGTTCCAGCTGATGTAAAATACATT
genomic: CATCAGGAAATGTAATACTTAGTGACTTTGGTGTCCACATGCAACAGAAGgtatgttttc ... cgaattccagATTAAGAGTCATTTCAAGGACATCGGTGTTCCAGCTGATGTAAAATACATT
EST: gi|87018028|gb|CI275842.1|CI275842
EST:     CATCAGGAAATGTAATACTTAGTGACTTTGGTGTCCACATGCAACAGAAG                         ATTAAGAGTCATTTCAAGGACATCGGTGTTCCAGCTGATGTAAAATACATT
genomic: CATCAGGAAATGTAATACTTAGTGACTTTGGTGTCCACATGCAACAGAAGgtatgttttc ... cgaattccagATTAAGAGTCATTTCAAGGACATCGGTGTTCCAGCTGATGTAAAATACATT