1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTGCTAATGCTGGCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCAgtatgattgatcatctgtattcaacttattagtttttttttttgtaatcataatttgttccaaaaattctaatggtatttatttttgacttatcaatacag
species | Oryza sativa |
transcript | LOC_Os09g07830.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCA GCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCAEST: gi|27410210|gb|CA923280.1|CA923280
genomic: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCAgtatgattga ... atcaatacagGCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCA
EST: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCA GCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCAEST: gi|29640958|gb|CB645965.1|CB645965
genomic: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCAgtatgattga ... atcaatacagGCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCA
EST: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCA GCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCAEST: gi|86498219|gb|CI140852.1|CI140852
genomic: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCAgtatgattga ... atcaatacagGCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCA
EST: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCA GCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCAEST: gi|33683367|gb|CF311606.1|CF311606
genomic: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCAgtatgattga ... atcaatacagGCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCA
EST: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCA GCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCAEST: gi|88906443|gb|CI375515.1|CI375515
genomic: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCAgtatgattga ... atcaatacagGCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCA
EST: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCA GCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCAEST: gi|87020189|gb|CI259259.1|CI259259
genomic: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCAgtatgattga ... atcaatacagGCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCA
EST: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCA GCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCA
genomic: GCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCAgtatgattga ... atcaatacagGCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTGCTAATGCTGGCTTGGAGTCTTCTCGTGTTGATTACTATGAAATTAATGAAGCCTTTTCAgtatgattgatcatctgtattcaacttattagtttttttttttgtaatcataatttgttccaaaaattctaatggtatttatttttgacttatcaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC