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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCATCCTGCAAGCTATTTCATTGCTGGCCCCTGTCATGGGTGCCGAAATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatttgtaatttgtaaatgtatagtttacccatctgatcaaggccttattaacaaatatttttctaaatttcag

Basic information

species Oryza sativa
transcript LOC_Os09g07510.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G102858_T01 (Zea mays), 5'ss of exon 11
TGACCATCCTGCAAGCTATTTCATTGCTGGCCCCTGTCATGGGTGCCGAAATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatttgtaatttgtaaatgtatagtttacccatctgatcaaggccttattaacaaatatttttctaaatttcag
||||||   ||||||||||||| ||||| || |||||||||||| | || ||||| || |||||| |||||||||| || |||  ||| |||||||||||||||        |||   ||     |  ||  ||||| | ||  ||||| || | | | |        | ||| |   ||
TGACCACTTTGCAAGCTATTTCTTTGCTAGCTCCTGTCATGGGTCCTGATATCACATGCCAACAGTTGCTCCCTGTCGTCATTGCTTCTTCAAAGGACAGgtgagtccaagataacacgtgt---tgaagcataccc-tttg--caaggtctcactgatat---cacctttaattgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86528212|gb|CI168418.1|CI168418
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|29658916|gb|CB655191.1|CB655191
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATATTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86435837|gb|CI107070.1|CI107070
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|18386129|gb|BM419328.1|BM419328
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88375032|gb|CI523297.1|CI523297
EST:     ATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|58693179|gb|CK081866.1|CK081866
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88908429|gb|CI091022.1|CI091022
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88233678|gb|CI233527.1|CI233527
EST:     ACCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|58611289|gb|CK039001.1|CK039001
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|29641703|gb|CB646710.1|CB646710
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|38476835|gb|CF960968.1|CF960968
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACAT
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACAT
EST: gi|18385652|gb|BM418851.1|BM418851
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCCAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88842737|gb|CI371637.1|CI371637
EST:     GCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: GCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86432215|gb|CI085826.1|CI085826
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88226167|gb|CI226083.1|CI226083
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88270566|gb|CI385824.1|CI385824
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGTACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCACGGCACTTATAC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCA-GGCACTTATAC
EST: gi|88957198|gb|CI095184.1|CI095184
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|22305543|gb|BQ906751.1|BQ906751
EST:     GTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: GTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|58694273|gb|CK082960.1|CK082960
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|25806838|gb|CA762799.1|CA762799
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88848603|gb|CI087125.1|CI087125
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|89185746|gb|CI047615.1|CI047615
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|58682290|gb|CK070977.1|CK070977
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86251810|gb|CI019002.1|CI019002
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGGTTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|87041657|gb|CI196279.1|CI196279
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88964714|gb|CI070060.1|CI070060
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|87017349|gb|CI301385.1|CI301385
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAG
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAG
EST: gi|86415586|gb|CI029597.1|CI029597
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86826738|gb|CI364259.1|CI364259
EST:     AACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: AACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86490943|gb|CI133576.1|CI133576
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|29642127|gb|CB647134.1|CB647134
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|87041898|gb|CI196520.1|CI196520
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCCGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88214319|gb|CI214168.1|CI214168
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88275045|gb|CI395649.1|CI395649
EST:     TAATTCGTCAAA-GACAG                         AGTGCCAAACATCAAATTCAATGTTGC-AAGGTTCTGCAGGCACTTATACC
genomic: TAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|87038212|gb|CI192834.1|CI192834
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88850387|gb|CI093068.1|CI093068
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|58677559|gb|CK066246.1|CK066246
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCCAACATCCAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|58687550|gb|CK076237.1|CK076237
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|87036423|gb|CI191045.1|CI191045
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88970813|gb|CI385422.1|CI385422
EST:     CTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: CTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|109712498|gb|CI105106.1|CI105106
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86252938|gb|CI057863.1|CI057863
EST:     GTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: GTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88985143|gb|CI006797.1|CI006797
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|89185684|gb|CI047553.1|CI047553
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86827380|gb|CI272801.1|CI272801
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|87041468|gb|CI196090.1|CI196090
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88850472|gb|CI093153.1|CI093153
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACGG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86824992|gb|CI358178.1|CI358178
EST:     ACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAA-GTTCTGCAGGCACTTATACC
genomic: ACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|58663458|gb|CK052144.1|CK052144
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|29667131|gb|CB663406.1|CB663406
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|58685311|gb|CK073998.1|CK073998
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86486139|gb|CI128772.1|CI128772
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTCCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86484706|gb|CI127339.1|CI127339
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88961182|gb|CI096586.1|CI096586
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|29621783|gb|CB626794.1|CB626794
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86603981|gb|CI114755.1|CI114755
EST:     TAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: TAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88266211|gb|CI377113.1|CI377113
EST:     TGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: TGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88226574|gb|CI226490.1|CI226490
EST:     ATCACTTGTCAACAGGTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|10794822|gb|AU108788.1|AU108788
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|87039324|gb|CI193946.1|CI193946
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCCGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86899096|gb|CI296244.1|CI296244
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGT
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGT
EST: gi|88969914|gb|CI383416.1|CI383416
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88251971|gb|CI350399.1|CI350399
EST:     CACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: CACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|89162822|gb|CI099712.1|CI099712
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88957286|gb|CI095262.1|CI095262
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86414361|gb|CI068764.1|CI068764
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86878790|gb|CI340633.1|CI340633
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88974279|gb|CI019952.1|CI019952
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGGTTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88250536|gb|CI348766.1|CI348766
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|8857541|gb|AU094859.1|AU094859
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATNCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|89195046|gb|CI051159.1|CI051159
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88295785|gb|CI532746.1|CI532746
EST:     CCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: CCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88971726|gb|CI388969.1|CI388969
EST:     TTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: TTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86431436|gb|CI085047.1|CI085047
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|33678826|gb|CF307065.1|CF307065
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|29621782|gb|CB626793.1|CB626793
EST:     ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: ATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|86889276|gb|CI315887.1|CI315887
EST:     GTCAACAGCTGCTCCCTGTTTTGATTAATTCCTCAAAGGACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGACACTTATACC
genomic: GTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
EST: gi|88266571|gb|CI377473.1|CI377473
EST:     CTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAA-GACAG                         AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC
genomic: CTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatt ... taaatttcagAGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACCATCCTGCAAGCTATTTCATTGCTGGCCCCTGTCATGGGTGCCGAAATCACTTGTCAACAGCTGCTCCCTGTTGTGATTAATTCCTCAAAGGACAGgtgaaaaatttgtaatttgtaaatgtatagtttacccatctgatcaaggccttattaacaaatatttttctaaatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT