1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTTATACGACTGGAAATCCTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAGgtgtgttttcgtattcacattctccctgctttttcttcctgaggatcagtcgatcgccattgtgaatttgtgataagcaaattacgtgcttcatacag
species | Oryza sativa |
transcript | LOC_Os08g44810.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAG GGTGATGGTGACTACGAACTAGTTAAAGATGTGGCAATGGACGATTTCCTCEST: gi|86901993|gb|CI300232.1|CI300232
genomic: CTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAGgtgtgttttc ... cttcatacagGGTGATGGTGACTACGAACTAGTTAAAGATGTGGCAATGGACGATTTCCTC
EST: CTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAG GGTGATGGTGACTACGAACTAGTTAAAGATGTGGCAATGGACGATTTCCTCEST: gi|3763525|gb|AU030277.1|AU030277
genomic: CTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAGgtgtgttttc ... cttcatacagGGTGATGGTGACTACGAACTAGTTAAAGATGTGGCAATGGACGATTTCCTC
EST: CTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAG GGTGATGGTGNNTACGA-CTAGTTAAAGATGTGGCA-TGGACGATT-CCTCEST: gi|29613418|gb|CB618431.1|CB618431
genomic: CTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAGgtgtgttttc ... cttcatacagGGTGATGGTGACTACGAACTAGTTAAAGATGTGGCAATGGACGATTTCCTC
EST: CTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAG GGTGATGGTGACTACGAACTAGTTAAAGATGTGGCAATGGACGATTTCCTCEST: gi|29677718|gb|CB673993.1|CB673993
genomic: CTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAGgtgtgttttc ... cttcatacagGGTGATGGTGACTACGAACTAGTTAAAGATGTGGCAATGGACGATTTCCTC
EST: CTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAG GGTGATGGTGACTACGAACTAGTTAAAGATGTGGCAATGGACGATTTCCTC
genomic: CTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAGgtgtgttttc ... cttcatacagGGTGATGGTGACTACGAACTAGTTAAAGATGTGGCAATGGACGATTTCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTATACGACTGGAAATCCTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAGgtgtgttttcgtattcacattctccctgctttttcttcctgaggatcagtcgatcgccattgtgaatttgtgataagcaaattacgtgcttcatacag
- - - - - - - - - - - - - - - - AGAGGA