1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAAgtaagcattcgcatcatgttaggttgggggcgttgcatttagggcaagacataattgtttatcttcgccattcattcgtattttatatttgatagctgctaactctatttcttctctatgtgctacag
species | Oryza sativa |
transcript | LOC_Os08g42740.5 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAA CTTGCAAAATTAACAGATGTTTTTGGAATACCGGAGACCCAACTGAAGTTCEST: gi|29643281|gb|CB648288.1|CB648288
genomic: TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAAgtaagcattc ... tgtgctacagCTTGCAAAATTAACAGATGTTTTTGGAATACCGGAGACCCAACTGAAGTTC
EST: TCGAGGCACAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAA CTTGCAAAATTAACAGATGTTTTTGGAATACCGGAGACCCAACTGAAGTTCEST: gi|29677672|gb|CB673947.1|CB673947
genomic: TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAAgtaagcattc ... tgtgctacagCTTGCAAAATTAACAGATGTTTTTGGAATACCGGAGACCCAACTGAAGTTC
EST: TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAA CTTGCAAAATTAACAGATGTTTTTGGAATACCGGAGACCCAACTGAAGTTC
genomic: TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAAgtaagcattc ... tgtgctacagCTTGCAAAATTAACAGATGTTTTTGGAATACCGGAGACCCAACTGAAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAAgtaagcattcgcatcatgttaggttgggggcgttgcatttagggcaagacataattgtttatcttcgccattcattcgtattttatatttgatagctgctaactctatttcttctctatgtgctacag
- - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - AAGGAA