1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGgtattgtccaattcaaataaatattatttcgtctgttctttcaattttttgcatgattacttatgcaatttcccatgttctttcttag
species | Oryza sativa |
transcript | LOC_Os08g40880.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAG TGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGEST: gi|218489540|gb|FG952486.1|FG952486
genomic: TGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGgtattgtcca ... tctttcttagTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTG
EST: TGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAG TGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGEST: gi|27546738|gb|CA764848.2|CA764848
genomic: TGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGgtattgtcca ... tctttcttagTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTG
EST: TGGCTCTTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAG TGCCCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTG
genomic: TGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGgtattgtcca ... tctttcttagTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGgtattgtccaattcaaataaatattatttcgtctgttctttcaattttttgcatgattacttatgcaatttcccatgttctttcttag
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