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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTATCAGAAGGAAACACCCTCATCTTTCAGTTTATCTCCACGTCTATCAATATTTCCACAATTTATGTTTAATTTAAGGCGTTCTCAGTTTGTTCAGgtaatctgtttctcatgttcattcagtcatgctgaacatatactctcagtttgatttagactattgagcggattgttgccacggatatctgcttgattat...

Basic information

species Oryza sativa
transcript LOC_Os08g36994.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g36994.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 9
AGACTATCAGAAGGAAACACCCTCATCTTTCAGTTTATCTCCACGTCTATCAATATTTCCACAATTTATGTTTAATTTAAGGCGTTCTCAGTTTGTTCAGgtaatctgtttctcatgttcattcagtcatgctg-aacatatactctcagtttgatttag-actattgagcggattgttgccacggatatctgcttgattat--
 || | ||| || || || || || ||||||||||| |||||  |  | |||||||| || |||||||||||| ||||| | || ||||||||||||||||||     ||| |  ||||   |   | |   ||  | || |  || ||||   |||| | ||| |   |   | |  |    |  |  | |  || || |   
GGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAGTTTGTTCAGgtatgtgttttatattgttggatttataagtttgtgatatttg-tcacagtaatattttgtactttaatgtttacttattttccttaattatattt-atcacag

upper sequence: LOC_Os08g36994.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA16G09260.1 (Glycine max), 5'ss of exon 3
AGACTATCAGAAGGAAACACCCTCATCTTTCAGTTTATCTCCACGTCTATCAATATTTCCACAATTTATGTTTAATTTAAGGCGTTCTCAGTTTGTTCAGgtaatctgtttctcatgttc--attcagtcatgctgaacatatactctcagtttgatttagactattgagcggattgttgccacggatatctgc-ttgattat--
 || | ||| || || || || || ||||||||||| |||||  |  | |||||||| || |||||||||||| ||||| | || ||||| |||||||||||| | ||||    ||  ||  |   |   | | |    ||||  |  ||||   |||| |    || |  |  |  ||        ||  |   || || |   
GGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAATTTGTTCAGgta-tgtgttgtgtattgtcggagctatataagtttgtgatat-ttgccagtgatatttggtac-ttcaatgtttacttattttccttaattatatttatcacag

upper sequence: LOC_Os08g36994.1 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 11
AGACTATCAGAAGGAAACACCCTCATCTTTCAGTTTATCTCCACGTCTATCAATATTTCCACAATTTATGTTTAATTTAAGGCGTTCTCAGTTTGTTCAGgta-atctgtttctcatgttcattcagtcatgctg--aacatatactctcagtttgatttagactattgagcggattgttgccacggatatctgcttgatt-at------------------------
||| || || ||||| |  || || |||||||| ||||||||| |  | ||||||||||| || ||||| ||| ||||  | ||||||||||||||||||||| | |||  | |   ||| ||      ||  |   | | |||| ||  ||||||||   || || | |     | |   || |  || |   || |||| ||                        
AGATTACCAAAAGGACAACCCATCTTCTTTCAGCTTATCTCCAAGATTTTCAATATTTCCCCAGTTTATATTTCATTTGCGACGTTCTCAGTTTGTTCAGgtataactgactattg-gtttataattctatctttgcatcttataatcgtagtttgatgatgattaattact--ctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58656399|gb|CK045079.1|CK045079
EST:     CAATATTTCCACAATTTATGTTTAATTTAAGGCGTTCTCAGTTTGTTCAG                         GTGTCTAATAATAGTCCAGATGAAACTGCATATTTTAGGATGATGTTCAAC
genomic: CAATATTTCCACAATTTATGTTTAATTTAAGGCGTTCTCAGTTTGTTCAGgtaatctgtt ... tcccatgcagGTGTTTAATAATAGTCCAGATGAAACTGCATATTTTAGGATGATGTTAAAC