Sequence
atgc intronic sequence ATGC exonic sequenceGTGGAAAACAAAGAAGGATTTTGTTTTTTCCAGACAATGGTTTCGTGGACAAGATGGGGCATATAgtaagtactaagtctttattatatcacagctttattttaatatattttagatctctactactactctttgacactcctaaatggacggtcctaaaatata...
Basic information
species | Oryza sativa |
transcript | LOC_Os08g34060.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os08g34060.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA13G22460.1 (Glycine max), 5'ss of exon 11
GTGGAAAACAAAGAAGGATTTTGTTTTTTCCAGACAATGGTTTCGTGGACAAGATGGGGCATATAgtaagtactaagtctttattatatcacagcttta--ttttaatatattttagatctctactactactctt-tgacactcctaaatggacggtcctaaaatata
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GTGGCACTCAAAGCAGGATTTTGTCTTCTCTAGGCAATGGTTTCGGGGACAAGATGGAACATACAgtaagactatggttattgtgatcacgtgcttggaacttttgtcacggtcaagaattatttcattgctagtattgtagtattg--tgtacttcatttacttgc-
upper sequence: LOC_Os08g34060.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA17G11250.1 (Glycine max), 5'ss of exon 11
GTGGAAAACAAAGAAGGATTTTGTTTTTTCCAGACAATGGTTTCGTGGACAAGATGGGGCATATAgtaagtactaagtctttattatatcacagctttattttaatatattttagatctctactactactctttgacactcctaa-atggacggtcctaaaatata
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GTGGCACTCAAAGCAGGATTTTGTCTTCTCTAGGCAATGGTTTCGGGGACAAGATGGAACATATAgtaagattgtggttattatgatctgcttggaactttttgtcatggtcaagaattagttcatttacttacattgctagtattgtgtacttcatttacttgt-
upper sequence: LOC_Os08g34060.2 (Oryza sativa), 5'ss of exon 11
lower sequence: AT5G35180.3 (Arabidopsis thaliana), 5'ss of exon 11
GTGGAAAACAAAGAAGGATTTTGTTTTTTCCAGACAATGGTTTCGTGGACAAGATGGGGCATATAgtaagtactaagtctttattatatcacagctttattttaatatattttag-atctctactactactctttgacactcctaaatgga--cggtcctaaaatata
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ATGGCAGTCAAAGAGAGATTTTGTGTTCTCTAGACAGTGGGTTCGTGGGCAAGATGGGACATATAgtaagtccagaggaatactattctaaataacgttttcttatatattctgatgtctgtattggctatgcataaaggtagtgattagtgttagtcatgccac---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29626394|gb|CB631405.1|CB631405EST: GGATTTTGTTTTTTCCAGACAATGGTTTCGTGGACAAGATGGGGCATATA CCATTTTGCAGATTCCTGCTTGTCACAAGAACAAACCTCCAAGGCATGGC
genomic: GGATTTTGTTTTTTCCAGACAATGGTTTCGTGGACAAGATGGGGCATATAgtaagtacta ... cttggtgcagCCATTTTGCAGATTCCTGCTTGTCACAAGAACAAACCTCCAAGGCATGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGAAAACAAAGAAGGATTTTGTTTTTTCCAGACAATGGTTTCGTGGACAAGATGGGGCATATAgtaagtactaagtctttattatatcacagctttattttaatatattttagatctctactactactctttgacactcctaaatggacggtcctaaaatata
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG