1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCTTCCTGTGATTCTGCCCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTGgtatgtatatgttctagtgatttatctatgctgatgtagaagctccatttctgctagtagttctttttaaatagcatgccaaatatgaattccaaaagga...
species | Oryza sativa |
transcript | LOC_Os07g37610.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTG GTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTTEST: gi|29661017|gb|CB657292.1|CB657292
genomic: CCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTGgtatgtatat ... tgcatttcagGTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTT
EST: CCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTG GTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTTEST: gi|88347742|gb|CI655095.1|CI655095
genomic: CCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTGgtatgtatat ... tgcatttcagGTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTT
EST: CCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTG GTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTTEST: gi|218498178|gb|FG960176.1|FG960176
genomic: CCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTGgtatgtatat ... tgcatttcagGTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTT
EST: CCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTG GTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTTEST: gi|88570252|gb|CI661427.1|CI661427
genomic: CCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTGgtatgtatat ... tgcatttcagGTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTT
EST: CCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTG GTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTT
genomic: CCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTGgtatgtatat ... tgcatttcagGTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTCCTGTGATTCTGCCCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTGgtatgtatatgttctagtgatttatctatgctgatgtagaagctccatttctgctagtagttctttttaaatagcatgccaaatatgaattccaaaagga
- - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - GAGCTT