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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCCAGGCACTACAATTGTGACAGATAGCGTGACTTCTGATGGGCTGACTACATTTATTGAAAATAAACTTGgtaggtatttgttagattggtcctctgttctatttgtttatcggttgctcatttgttctatgataaag

Basic information

species Oryza sativa
transcript LOC_Os07g26610.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g26610.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G069676_T02 (Zea mays), 5'ss of exon 11
CACCCAGGCACTACAATTGTGACAGATAGCGTGACTTCTGATGGGCTGACTACATTTATTGAAAATAAACTTGgtaggtatttgttagattg--gtcctctgttctatttgtttatcggttgctcatttgttctatgata--aag
|| ||||| |||||| ||||||||||||| |||||||| |||||  |||||  ||||||||||||||||||||||| ||| |  | | ||||  || || ||||  | |   | |||  || || || | || | |  |   |||
CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTGgtatgtactgttcacattgtcgtgctttgtttgagtaaataatcatttacttatctatttttttttcttaag

upper sequence: LOC_Os07g26610.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA10G35490.2 (Glycine max), 5'ss of exon 11
CACCCAGGCACTACAATTGTGACAGATAGCGTGACTTCTGATGGGCTGACTACATTTATTGAAAATAAACTTGgtaggtatttgt-tagattggt----cctctgttctatttgtttatcggttgctcatttgt--tctatgataaag--------------------------------------------------------------------------------------
|| || || || || ||||| ||||| || ||||||||||||||||| || || |||||||| || |||||||||| | |    | || | |||      || |  ||||    | |  |  |   || ||     |  |   ||||                                                                                       
CATCCTGGAACAACTATTGTCACAGACAGTGTGACTTCTGATGGGCTTACCACGTTTATTGAGAAGAAACTTGgtatggaggaatctaaactggcatgatctttagtctacccttctcaccttctttctttaagagttcactgtaaactaaaatcccttgcttttattgaatttgaatggaaaatttcttgaaatgagatagtgttaataacttgctaatgttatatgtcttag

upper sequence: LOC_Os07g26610.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA20G32030.1 (Glycine max), 5'ss of exon 11
CACCCAGGCACTACAATTGTGACAGATAGCGTGACTTCTGATGGGCTGACTACATTTATTGAAAATAAACTTGgtaggtatttgt-tagattggt----cctctgttctatttgtttatcggttgctcatttgt---tctatgataaag----------------------------------------------------------------------------
|| || || || || ||||| ||||| || ||||||||||||||||| || || |||||||| || |||||||||| | |    | || | |||      || |  ||||    | |  |  ||  |  |||     |  |   ||||                                                                             
CATCCTGGAACAACTATTGTCACAGACAGTGTGACTTCTGATGGGCTTACCACGTTTATTGAGAAGAAACTTGgtatggaggaatctaaactggcatgatctttagtctacccttctcacctttttttctttaagagttcactgtaaactaaaatcccttttattgaattgtaaattacttgaaatgagatagtgctaataacttgccaatactgtttgtctcag

upper sequence: LOC_Os07g26610.2 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 12
CACCCAGGCACTACAATTGTGACAGATAGCGTGACTTCTGATGGGCTGACTACATTTATTGAAAATAAACTTGgtaggtatttgttagattggtcctctgttctatttgtttatcggttgctcatttgttctatgataaag------------
|| ||||| || || || || || ||||| || ||||| ||||| ||||||||||| |||||||| |||||||||| ||      |  | |||     ||| |   |  | ||  | |     |||||||||    | |||            
CATCCAGGAACAACCATAGTCACGGATAGTGTAACTTCAGATGGCCTGACTACATTCATTGAAAAGAAACTTGgtatgttgaaactgaaatggcataatgtccatatcatataatgatga---atttgttcttaactcaagggttccttatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29613465|gb|CB618478.1|CB618478
EST:     AGATAGCGTGACTTCTGATGGGCTGACTACATTTATTGAAAATAAACTTG                         GAGGGAAGCATCATCGTTTCAAGCGAGGGTAC
genomic: AGATAGCGTGACTTCTGATGGGCTGACTACATTTATTGAAAATAAACTTGgtaggtattt ... tatgataaagGAGGGAAGCATCATCGTTTCAAGCGAGGGTAC