1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGGTGGAACCTTGAAAAGTGCGAGTCCAGCATCTCTTCTAAAGGAAGCAATTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAGgtaaggactggagcctgattgctgttaactggttaattgattgaaacatttcttaactagttaattatatctttgttgcag
species | Oryza sativa |
transcript | LOC_Os07g24190.3 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACATACTGGGGGAAAGAG ATTGGCTGGATCTACTGATCAGCTACAGAAGATATTCTAACTGGTEST: gi|15008337|gb|AU222725.1|AU222725
genomic: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAGgtaaggactg ... tttgttgcagATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGT
EST: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAG ATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAGEST: gi|58607492|gb|CK035525.1|CK035525
genomic: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAGgtaaggactg ... tttgttgcagATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAG
EST: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAG ATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTAAAGEST: gi|86882518|gb|CI327259.1|CI327259
genomic: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAGgtaaggactg ... tttgttgcagATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAG
EST: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGG-AAGAG ATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAATEST: gi|163928491|gb|EG711376.1|EG711376
genomic: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAGgtaaggactg ... tttgttgcagATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAG
EST: CAGACTGGGGGAAAGAG ATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAGEST: gi|29675228|gb|CB671503.1|CB671503
genomic: CAGACTGGGGGAAAGAGgtaaggactg ... tttgttgcagATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAG
EST: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAG ATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAGEST: gi|29628005|gb|CB633016.1|CB633016
genomic: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAGgtaaggactg ... tttgttgcagATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAG
EST: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAG ATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAGEST: gi|86876412|gb|CI318407.1|CI318407
genomic: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAGgtaaggactg ... tttgttgcagATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAG
EST: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAG ATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAG
genomic: TTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAGgtaaggactg ... tttgttgcagATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGGAACCTTGAAAAGTGCGAGTCCAGCATCTCTTCTAAAGGAAGCAATTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGGGGAAAGAGgtaaggactggagcctgattgctgttaactggttaattgattgaaacatttcttaactagttaattatatctttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA