1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACGAAACCTAAAACAGAGAAGAAGAAAAGATCTTTCTTCAAGAGAGCAGAAAATCAATCCCCTGCATATGCACTTGGTGAAATTGAGGAGGGTGCTCCAGgtacgtgaacttctgaactaaacattgtgggtggtttttcctgaaacacctttgtagtaatagcatatttaatccttcaatatttttggcag
species | Oryza sativa |
transcript | LOC_Os07g24190.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAATCAATCCCCTGCATATGCACTTGGTGAAATTGAGGAGGGTGCTCCAG GAGCTGAAAATGAAAAGGCTGGTATTGTAAATCAACAGAAGCTGGAAAAGAEST: gi|58607492|gb|CK035525.1|CK035525
genomic: AAATCAATCCCCTGCATATGCACTTGGTGAAATTGAGGAGGGTGCTCCAGgtacgtgaac ... tttttggcagGAGCTGAAAATGAAAAGGCTGGTATTGTAAATCAACAGAAGCTGGAAAAGA
EST: AAATCAATCCCCTGCATATGCACTTGGTGAAATTGAGGAGGGTGCTCCAT GAGCTGAAAATGAAAAGGCTGGTATTGTCAAATCAACAGAAGCTGGAAAAGEST: gi|29628005|gb|CB633016.1|CB633016
genomic: AAATCAATCCCCTGCATATGCACTTGGTGAAATTGAGGAGGGTGCTCCAGgtacgtgaac ... tttttggcagGAGCTGAAAATGAAAAGGCTGGTATTGT-AAATCAACAGAAGCTGGAAAAG
EST: AAATCAATCCCCTGCATATGCACTTGGTGAAATTGAGGAGGGTGCTCCAG GAGCTGAAAATGAAAAGGCTGGTATTGTAAATCAACAGAAGCTGGAAAAGA
genomic: AAATCAATCCCCTGCATATGCACTTGGTGAAATTGAGGAGGGTGCTCCAGgtacgtgaac ... tttttggcagGAGCTGAAAATGAAAAGGCTGGTATTGTAAATCAACAGAAGCTGGAAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGAAACCTAAAACAGAGAAGAAGAAAAGATCTTTCTTCAAGAGAGCAGAAAATCAATCCCCTGCATATGCACTTGGTGAAATTGAGGAGGGTGCTCCAGgtacgtgaacttctgaactaaacattgtgggtggtttttcctgaaacacctttgtagtaatagcatatttaatccttcaatatttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG