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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAGgtatgttgctttatctataggtgtttttccagatattgttaatgggattttcttcaatgctaatgtttactatatttgttattaattgtctggcttatcaaatatccaatattctatacag

Basic information

species Oryza sativa
transcript LOC_Os07g22400.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G130351_T01 (Zea mays), 5'ss of exon 11
ATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAGgtatgttgctttatctataggtgtttttccagatattgttaatgggattttcttcaatgctaatgtttactatatttgtta--ttaattgtctggcttatcaaatatccaatattctatacag
|||||||||||||| || ||||| ||||||||||| |||||||| |||||||| |   | | |||| |  ||| | |    ||   ||  || |||||   |  ||| |    | || |    |||  |  | |||||  || ||| |     |  ||             
ATTGTCGAAGCATTAAGCAATGCTTATTTTGGACCCGATTACTCCCAGgtatgct--ctcacctat-gcagttatgct---taacttttctgagatttaact--atgttttcctctagtgctgttgccagctgaattgcttgacttgtttttcacacag------------

upper sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G044317_T03 (Zea mays), 5'ss of exon 11
ATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAGgtatgttgctttatctataggtgtttttccagatattgttaatgggattttcttcaatgctaatgtttactatatttgttattaattgtctggcttatcaaatatccaatattctatacag
||||| |||||||| || ||||| ||||||||||||||||||||||||||||| ||  | | || |       | | ||| |||| ||     ||||||| | |    |||  | |  | |   |     |  ||| | |    ||    |  |   | ||  | ||||
ATTGTTGAAGCATTAAGCAATGCGTATTTTGGACCTGATTACTCTCAGgtatgctgtgtcacctct---cacctatgcagttattctt-----gattttcctgagatttaac-tatgttttccctagcgctg-ttgccagctgaattgcttcacttgt-tttcacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3766960|gb|AU031070.1|AU031070
EST:     ATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAG                         CCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAA
genomic: ATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAGgtatgttgct ... ttctatacagCCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAA