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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGACCTTCTTGGGCCAGTGGATGAACTATTTATTGATACATACGACAGATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatcgcagaaatatcaagtgtatgtaggttagacatatgaccaaaaaactgcatttgaaataaacatttaattcgatttgcttttcag

Basic information

species Oryza sativa
transcript LOC_Os07g16970.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g16970.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G047431_T01 (Zea mays), 5'ss of exon 10
GATAGACCTTCTTGGGCCAGTGGATGAACTATTTATTGATACATACGACAGATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatcgcagaaatatcaagtgtatgtaggttagacatatgaccaaaaaactgcatttgaaataaacatttaattcgatttgcttttcag
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GATCGATCTTCTTGGGAAGGTGGACGAGTTATTTATCGACATATATGACAGATATGAACCTACCAATGACTCATCAGCAGACAATTGTTTCATCTCAACAgtaag-catt------atctgacacgcacctttgataga---attttcaaatatccttattt-------ccatttcaattaactaccttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|44676146|gb|CR289580.1|CR289580
EST:     GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACA                         AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
genomic: GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: gi|88218519|gb|CI218368.1|CI218368
EST:     GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACA                         AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
genomic: GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: gi|29616693|gb|CB621705.1|CB621705
EST:     GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACA                         AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
genomic: GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: gi|88257202|gb|CI359590.1|CI359590
EST:     CTTCAGACAATTGTTTCATCTCAACA                         AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
genomic: CTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: gi|86838203|gb|CI343373.1|CI343373
EST:     CCATCTTCAGACAATTGTTTCATCTCAACA                         AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
genomic: CCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: gi|86838076|gb|CI343326.1|CI343326
EST:     TCAGACAATTGTTTCATCTCAACA                         AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
genomic: TCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: gi|88840159|gb|CI079613.1|CI079613
EST:     TAATGACCCATCTTCAGACAATTGTTTCATCTCAACA                         AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
genomic: TAATGACCCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC