1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttgaaattccagcaggatattgtaacgtcctcttgttgtcttttttgccgtatgggctatggctggctgctacattcacttgttagcctgatattgttcttgcaagttttatgtatgctgaacccatgaccttgtttttaatcag
species | Oryza sativa |
transcript | LOC_Os07g08170.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGGAGAGAGAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCTEST: gi|88961514|gb|CI096795.1|CI096795
genomic: GGGAGAGAGAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
EST: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCTEST: gi|89168320|gb|CI109524.1|CI109524
genomic: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
EST: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCTEST: gi|88443802|gb|CI552347.1|CI552347
genomic: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
EST: CAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCTEST: gi|86496777|gb|CI139410.1|CI139410
genomic: CAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
EST: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCTEST: gi|88222413|gb|CI222369.1|CI222369
genomic: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
EST: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCTEST: gi|22307047|gb|BQ908269.1|BQ908269
genomic: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
EST: GAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTANAATCATCGGCEST: gi|86838938|gb|CI330353.1|CI330353
genomic: GAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTA-AATCATCGGC
EST: CACCCGCCAGTGTATTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCTEST: gi|33807423|gb|CF329586.1|CF329586
genomic: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
EST: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCTEST: gi|4715602|gb|AU056718.1|AU056718
genomic: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
EST: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCTEST: gi|86487502|gb|CI130135.1|CI130135
genomic: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
EST: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
genomic: CACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttg ... ttttaatcagGCCGATCTTGAGGAAGTCAGTGCTCTGTATTTGGACGCTAAATCATCGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGgtatgtgttgaaattccagcaggatattgtaacgtcctcttgttgtcttttttgccgtatgggctatggctggctgctacattcacttgttagcctgatattgttcttgcaagttttatgtatgctgaacccatgaccttgtttttaatcag
- - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG