1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAGGGCTGGCAAAGCGGCCGATGTTTTCTACTGCCTCAAGCTTCTTGAAGCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgtttcccttacatatacatatgtatcttcaaagtttcataaacatcagagatctctcaactagacatgactcaggagtacctgaatttatcctt...
species | Oryza sativa |
transcript | LOC_Os07g01760.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAAG GGTGTTCCCACCTGAG-ACGACCATCCTGCEST: gi|58589467|gb|CF987775.1|CF987775
genomic: GCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgttt ... tgcactgcagGGTGTTCC-ACCTGAGGACGACCATCCTGC
EST: CTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGG GGTGTTCCACCTGAGGACGAC-ATCCTGCCAGCTGAGGAGGACATGCCTGCEST: gi|33381971|gb|CF197314.1|CF197314
genomic: CTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgttt ... tgcactgcagGGTGTTCCACCTGAGGACGACCATCCTGCCAGCTGAGGAGGACATGCCTGC
EST: GCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGG GGTGTTCCACCTGAGGACGACCATCCTGNNNGCTGAGGAGGACATGCCTGCEST: gi|33381462|gb|CF196805.1|CF196805
genomic: GCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgttt ... tgcactgcagGGTGTTCCACCTGAGGACGACCATCCTGCCAGCTGAGGAGGACATGCCTGC
EST: GCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGG GGTGTTCCACCTGAGGACGACCATCCTGCCAGCTGANNNNNACATGCCTGCEST: gi|11442608|gb|BF430511.1|BF430511
genomic: GCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgttt ... tgcactgcagGGTGTTCCACCTGAGGACGACCATCCTGCCAGCTGAGGAGGACATGCCTGC
EST: GCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAA-GAAGG GGTGT-CCACCTGAGGACGACCATCCTGCCAGCEST: gi|38479882|gb|CF963971.1|CF963971
genomic: GCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgttt ... tgcactgcagGGTGTTCCACCTGAGGACGACCATCCTGCCAGC
EST: GCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGG GGTGTACCACCTGAGGACGACCATCCTGCCAGCTGAGGAGGACATGACTGC
genomic: GCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgttt ... tgcactgcagGGTGTTCCACCTGAGGACGACCATCCTGCCAGCTGAGGAGGACATGCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGGCTGGCAAAGCGGCCGATGTTTTCTACTGCCTCAAGCTTCTTGAAGCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgtttcccttacatatacatatgtatcttcaaagtttcataaacatcagagatctctcaactagacatgactcaggagtacctgaatttatcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG