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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTGCACCCAACACATGTTTTCAAAAACTTTGAGCAGTTCTCTGGAGCTACTTATGAGTGCAAGGCTGCGTATCCATCCTTCGATGACTCCAGCGGGgtatgttgttctctatgataatggaatttctgaaatttatagcctaactagcttaagtagcttgtatgttgtgtacaagtgaaataaggaaatcttatcaattaaatatgcag

Basic information

species Oryza sativa
transcript LOC_Os07g01540.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g01540.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G135839_T01 (Zea mays), 5'ss of exon 11
ATTTTTGCACCCAACACATGTTTTCAAAAACTTTGAGCAGTTCTCTGGAGCTACTTATGAGTGCAAGGCTGCGTATCCATCCTTCGATGACTCCAGCGGGgtatgttgttctctatgataatggaat--ttctgaaatttatagccta---actagcttaagtagcttgtatgttgtgtacaa------gtgaaataagga-aatcttatcaattaaatatgcag
 ||||||||||||||||||||||||| ||||||||||  |||||||||| | || ||||| |||||||| || ||||||||||  ||||| || |  |||||||||| ||  ||||| | ||| | |  ||||    | | |||   |   |  || ||| | | ||| | |||  | ||| |      |||| || || |  |||| ||  | |||||   |||
CTTTTTGCACCCAACACATGTTTTCAGAAACTTTGAGAGGTTCTCTGGAACCACCTATGAATGCAAGGCAGCTTATCCATCCTATGATGAGTCTACTGGGgtatgttttttcctatgttgatgaagtaattcttgcttatttagttcagtgatcagtttatgaatcttttgtgtactataccatcaattgtgagatgagcacgatctgatttactaaattcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87009563|gb|CI309084.1|CI309084
EST:     CTACTTATGAGTGCAAGGCTGCGTATCCATCCTTCGATGACTCCAGCGGG                         ATTGCGCTGGGTAATATACTAAAGTTCCGCAAGAAGAATTGGCAGTTTGAC
genomic: CTACTTATGAGTGCAAGGCTGCGTATCCATCCTTCGATGACTCCAGCGGGgtatgttgtt ... aaatatgcagATTGCGCTGGGTAATATACTAAAGTTCCGCAAGAAGAATTGGCAGTTTGAC
EST: gi|44677296|gb|CR290730.1|CR290730
EST:     CTACTTATGAGTGCAAGGCTGCGTATCCATCCTTCGATGACTCCAGCGGG                         ATTGCGCTGGGTAATATACTAAAGTTCCGCAAGAAGAATTGGCAGTTTGAC
genomic: CTACTTATGAGTGCAAGGCTGCGTATCCATCCTTCGATGACTCCAGCGGGgtatgttgtt ... aaatatgcagATTGCGCTGGGTAATATACTAAAGTTCCGCAAGAAGAATTGGCAGTTTGAC