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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACACAGGATAAAGAAGTTTGTTTTACACACAAACTTCCCTGGTCATTCAGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAGgtctgaactacttgctgtagaattagtttgttgtgaagaaaccaactacatcctattaactatatgtcttgatcag

Basic information

species Oryza sativa
transcript LOC_Os06g49990.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49990.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G116434_T01 (Zea mays), 5'ss of exon 11
ACACACAGGATAAAGAAGTTTGTTTTACACACAAACTTCCCTGGTCATTCAGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAGgtctgaactacttgctgtagaat--tagtttgttgtgaagaaaccaactacatcctattaactatatgtc--ttgatcag
||||| |||||||||||||||||||| || |||||||||||||| || |||||||||||||| |||| ||| || ||||||||||| || || || ||||||||||||||||||   || ||   ||||||| ||||| | ||  | | | |||| || | | || ||    ||  ||||
ACACATAGGATAAAGAAGTTTGTTTTGCATACAAACTTCCCTGGCCACTCAGATTTCAATTCATATAAGAAATGCAACTTTGTTATATACGACGCTGAAGgtctgaactacttgtaataaaaaaatagtttgctgtgatggaataatcca-atccaatcatccatctgctcttttctcag

upper sequence: LOC_Os06g49990.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA11G07910.2 (Glycine max), 5'ss of exon 11
ACACACAGGATAAAGAAGTTTGTTTTACACACAAACTTCCCTGGTCATTCAGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAGgtctgaa-----ctacttgc--tgtagaatt-agtttgttgtgaagaaaccaactacatcctattaactatatgtcttgatcag------------------------
|| ||||  || ||||||||||| |||||||| ||||||||||||||| | ||||||||||| || || ||||| ||||||||| ||||||   | ||  ||  | |      || ||||  || ||  || ||||||   |  |   | ||  |  |   | ||      |  |  |||| |                         
ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatctcttatttgcattgcagtgtttagtttggccttgatgtaacagatgtaaatttttgttgtgaaatagtgatgaaatatatttttggcctttccagcag

upper sequence: LOC_Os06g49990.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 11
ACACACAGGATAAAGAAGTTTGTTTTACACACAAACTTCCCTGGTCATTCAGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAGgtctgaactacttgctgtagaattagtttgttgtgaagaaaccaactacatcctattaactatatgtcttgatcag------------------------------
|| ||||  || ||||||||||| |||||||| ||||||||||||||| | ||||||||||| || || |||||||||||||||||| |||   | ||  ||  | | | |||    | | |||    ||||  |      |    |  ||| ||| || | | | | |  |  |                               
ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATTgtaagcagt-cttttatttgcattgcagtgtttagtttggtcttgatgtatcatataaattttttatgtgaaataagagaaaatctatttttggcctttccagcag

upper sequence: LOC_Os06g49990.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 11
ACACACAGGATAAAGAAGTTTGTTTTACACACAAACTTCCCTGGTCATTCAGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAGgtctgaa-----ctacttgc--tgtagaatt-agtttgttgtgaagaaaccaactacatcctattaactatatgtcttgatcag---------------------
|| ||||  || ||||||||||| |||||||| ||||||||||||||| | ||||||||||| || || ||||| ||||||||| ||||||   | ||  ||  | |      || ||||  || ||  || ||||||   |  |   | ||  |  |   | ||      |  |  |||| |                      
ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatctcttatttgcattgcagtgtttagtttggccttgatgtaacagatgtaaatttttgttgtgaaatagtgatgaaatatatttttggcctttccag

upper sequence: LOC_Os06g49990.3 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 11
ACACACAGGATAAAGAAGTTTGTTTTACACACAAACTTCCCTGGTCATTCAGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAGgtctgaactacttgctgtagaattagtttgttgtgaagaa-accaactacatcctattaactatatgtcttgatcag-----------
|| || |  || ||||| ||||| || ||||||||||  ||||| ||| ||||||| ||||| || ||||| || |||||||||||||||| | | ||  ||  |  ||  || |  |   | |  |||    | |||     ||||      ||  ||| ||| | | || ||              
ACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCAGATTTTAATTCATACATGAAATGCAACTTTGTTATCTATGGTTCTGATTgtaagttctgttttcatttttaatcatttcacataaagtttgtcaacaggg--ctgataattatttatttttattttcttgcatatag