1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAGGCATGTGCTCATTCATTTTTTGATGAGTTACGAGAACCACATGCAAAACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatttcaagacaataccattgtcgcatcatacctaaatacatctccgtttgtagagcttgtaatcaaacttctgtaattttttactatcattat...
species | Oryza sativa |
transcript | LOC_Os06g35530.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|33801683|gb|CF326713.1|CF326713
genomic: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|313079799|gb|HO213238.1|HO213238
genomic: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: AACTGCCAAATGGCCATCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|88839221|gb|CI000693.1|CI000693
genomic: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: CCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|38473115|gb|CF957247.1|CF957247
genomic: CCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|87018925|gb|CI256810.1|CI256810
genomic: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|29689143|gb|CB685418.1|CB685418
genomic: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|86855820|gb|CI271039.1|CI271039
genomic: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: CGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|86415257|gb|CI069660.1|CI069660
genomic: CGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: TGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|27547382|gb|CA765553.2|CA765553
genomic: TGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|86415256|gb|CI069659.1|CI069659
genomic: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|86491546|gb|CI134179.1|CI134179
genomic: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: AAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|29660850|gb|CB657125.1|CB657125
genomic: AAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|86478870|gb|CI121503.1|CI121503
genomic: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAA TTAGCAAATACAGACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCGEST: gi|86434446|gb|CI094789.1|CI094789
genomic: AACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
EST: ACTTTAAGCAAGAA TTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
genomic: ACTTTAAGCAAGAAgtaagttatt ... tgttttgcagTTAGCAAATACACACCCAGAGCTCGTGAGCAGGCTGTTACCAGAACATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCATGTGCTCATTCATTTTTTGATGAGTTACGAGAACCACATGCAAAACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatttcaagacaataccattgtcgcatcatacctaaatacatctccgtttgtagagcttgtaatcaaacttctgtaattttttactatcattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA