1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTTGAAAAACCCAAAACTTTTACCTGGAGGTGGTGCTACCGAGCTGACTGTATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttcagcatatttttatgttagtgatttaaaaggttagcaaagtgttctcataaagaggtgcttgcctatttgtatgtttgtctaagtcattcatcaatgcagcattcattagtttttttaatggctactttctgttttgtgactatgttatatcttatttatattttgtttgtttggatcag
species | Oryza sativa |
transcript | LOC_Os06g34690.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAG TGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTGEST: gi|218482787|gb|FG945649.1|FG945649
genomic: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttc ... tttggatcagTGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTG
EST: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAG TGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTGEST: gi|218489854|gb|FG947528.1|FG947528
genomic: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttc ... tttggatcagTGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTG
EST: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAG TGGCCCTATGAAGCTGCTGCTTTEST: gi|218478282|gb|FG948232.1|FG948232
genomic: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttc ... tttggatcagTGGCCCTATGAAGCTGCTGCTTT
EST: TATCAGCAGCACTGAAGCAAAAGAG-TCTTCAGTTGAAGGTGTAGAAAAG TGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTGEST: gi|27576407|gb|CA999101.1|CA999101
genomic: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttc ... tttggatcagTGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTG
EST: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAG TGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTGEST: gi|29661338|gb|CB657613.1|CB657613
genomic: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttc ... tttggatcagTGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTG
EST: AGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAG TGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTGEST: gi|218479881|gb|FG966071.1|FG966071
genomic: AGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttc ... tttggatcagTGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTG
EST: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAG TGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCACTTCCCAGAACTTTGEST: gi|58652439|gb|CK041119.1|CK041119
genomic: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttc ... tttggatcagTGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTG
EST: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAG TGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTGEST: gi|25806437|gb|CA762398.1|CA762398
genomic: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttc ... tttggatcagTGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTG
EST: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAG TGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTG
genomic: TATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttc ... tttggatcagTGGCCCTATGAAGCTGCTGCTTTAGCATTTGAAGCAATTCCAAGAACTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGAAAAACCCAAAACTTTTACCTGGAGGTGGTGCTACCGAGCTGACTGTATCAGCAGCACTGAAGCAAAAGAGTTCTTCAGTTGAAGGTGTAGAAAAGgtactttttcagcatatttttatgttagtgatttaaaaggttagcaaagtgttctcataaagaggtgcttgcctatttgtatgtttgtctaagtcattcatcaatgcagcattcattagtttttttaatggctactttctgttttgtgactatgttatatcttatttatattttgtttgtttggatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG