Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
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 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttacttactgcctgttgctatttcttttcttttctgtctgcgaactgcgatgctatttcggattgttgtaatggaattattgctgatatacataatcttgatgccataacag

Basic information

species Oryza sativa
transcript LOC_Os06g33710.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g33710.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G047867_T02 (Zea mays), 5'ss of exon 10
GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACT---------TGTGCTGAAAAGgtaggttacttactgcctgttgctatttcttttcttttctgtctgcgaa-ctgcg-atgctatttcg--gattgttgtaatggaattattgctgatatacataa-tcttgatgccataacag---------------------------------------------------
 | ||| ||||||||||||||||||||||||||||||| |||||||||||| || | |  |||         | ||||||||| ||  |||  ||  |   |  | |||||  |  | |  |  ||||      |   | ||  | ||  |   |   || |||    |  | ||   | ||| |  | ||    |    |  ||                                                    
ATCCATAGGGCTGCTTTTGTTCTGCCAACATTTGTAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtttgttagttact-ctattgatggtgtggttagtctttatgtccatgcattttgttctgccaacatttataagaagagaactggaaacatataccactccctttttttttgcaattgctactgcagtgctaacctttgcctctattttcatatgcatcatgacag

upper sequence: LOC_Os06g33710.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G047867_T02 (Zea mays), 5'ss of exon 10
GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACT---------TGTGCTGAAAAGgtaggttacttactgcctgttgctatttcttttcttttctgtctgcgaa-ctgcg-atgctatttcg--gattgttgtaatggaattattgctgatatacataa-tcttgatgccataacag---------------------------------------------------
 | ||| ||||||||||||||||||||||||||||||| |||||||||||| || | |  |||         | ||||||||| ||  |||  ||  |   |  | |||||  |  | |  |  ||||      |   | ||  | ||  |   |   || |||    |  | ||   | ||| |  | ||    |    |  ||                                                    
ATCCATAGGGCTGCTTTTGTTCTGCCAACATTTGTAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtttgttagttact-ctattgatggtgtggttagtctttatgtccatgcattttgttctgccaacatttataagaagagaactggaaacatataccactccctttttttttgcaattgctactgcagtgctaacctttgcctctattttcatatgcatcatgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660328|gb|CB656603.1|CB656603
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|29681268|gb|CB677543.1|CB677543
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86864966|gb|CI344531.1|CI344531
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|29681921|gb|CB678196.1|CB678196
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|2311358|gb|C27513.1|C27513
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTNCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88848995|gb|CI087517.1|CI087517
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88842302|gb|CI081558.1|CI081558
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86822619|gb|CI358099.1|CI358099
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86862613|gb|CI345627.1|CI345627
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86494920|gb|CI137553.1|CI137553
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88441062|gb|CI538837.1|CI538837
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86869232|gb|CI338956.1|CI338956
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86883401|gb|CI338006.1|CI338006
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86419330|gb|CI054131.1|CI054131
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|29639075|gb|CB644084.1|CB644084
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86866996|gb|CI343835.1|CI343835
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|15857950|gb|BI810762.1|BI810762
EST:     GTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCCAAGAAGATGAAAATAATG
genomic: GTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86880669|gb|CI321070.1|CI321070
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|89190560|gb|CI392413.1|CI392413
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88259431|gb|CI363724.1|CI363724
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86880431|gb|CI320959.1|CI320959
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAGGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|8527728|gb|AU092543.1|AU092543
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88274530|gb|CI394936.1|CI394936
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86850841|gb|CI338817.1|CI338817
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86832912|gb|CI332518.1|CI332518
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|29665561|gb|CB661836.1|CB661836
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88483761|gb|CI421032.1|CI421032
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88272390|gb|CI386245.1|CI386245
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATTAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86862323|gb|CI330207.1|CI330207
EST:     CAACATTTGTAAGGAGAGAACT-GAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|29689098|gb|CB685373.1|CB685373
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86841380|gb|CI336397.1|CI336397
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|29677613|gb|CB673888.1|CB673888
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88253373|gb|CI351999.1|CI351999
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTT-TGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86842312|gb|CI335231.1|CI335231
EST:     GTGCTGAAAAG                         GATAAATCAGAAACCAACCCAGTCGCGAAACCAAAGAAGATTAAAATAATG
genomic: GTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86536849|gb|CI177055.1|CI177055
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86841335|gb|CI336369.1|CI336369
EST:     ATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: ATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86492595|gb|CI135228.1|CI135228
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|18386428|gb|BM419626.1|BM419626
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACC-AAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86435914|gb|CI107147.1|CI107147
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86890032|gb|CI320021.1|CI320021
EST:     CAACATTT-TAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88272401|gb|CI386256.1|CI386256
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|29661774|gb|CB658049.1|CB658049
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|29657895|gb|CB654170.1|CB654170
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|29674258|gb|CB670533.1|CB670533
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88519646|gb|CI447300.1|CI447300
EST:     CCACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86869986|gb|CI316714.1|CI316714
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86850849|gb|CI338825.1|CI338825
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86901257|gb|CI326100.1|CI326100
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88312408|gb|CI584931.1|CI584931
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86889883|gb|CI333534.1|CI333534
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88828363|gb|CI000472.1|CI000472
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88839842|gb|CI017607.1|CI017607
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|88839338|gb|CI000810.1|CI000810
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|9865343|gb|AU101093.1|AU101093
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
EST: gi|86869884|gb|CI316612.1|CI316612
EST:     CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG                         GATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG
genomic: CAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttact ... gccataacagGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGgtaggttacttactgcctgttgctatttcttttcttttctgtctgcgaactgcgatgctatttcggattgttgtaatggaattattgctgatatacataatcttgatgccataacag

- - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - AGGAGA