1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGGAGGTTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTGgtaaatctgcttttactgcacattttcttggcgagcttaacttagtgtctaacttgtgtgacatttatccag
species | Oryza sativa |
transcript | LOC_Os06g24704.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTG AGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATTEST: gi|29670228|gb|CB666503.1|CB666503
genomic: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTGgtaaatctgc ... atttatccagAGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATT
EST: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTG AGCTACCAACTEST: gi|88197237|gb|CI197087.1|CI197087
genomic: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTGgtaaatctgc ... atttatccagAGCTACCAACT
EST: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTG AGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATTEST: gi|29670182|gb|CB666457.1|CB666457
genomic: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTGgtaaatctgc ... atttatccagAGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATT
EST: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTG AGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATTEST: gi|14571492|gb|BI118860.1|BI118860
genomic: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTGgtaaatctgc ... atttatccagAGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATT
EST: TTTCTAATTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTG AGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATTEST: gi|29665964|gb|CB662239.1|CB662239
genomic: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTGgtaaatctgc ... atttatccagAGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATT
EST: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTG AGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATTEST: gi|29670227|gb|CB666502.1|CB666502
genomic: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTGgtaaatctgc ... atttatccagAGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATT
EST: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTG AGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATTEST: gi|218485341|gb|FG954862.1|FG954862
genomic: TTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTGgtaaatctgc ... atttatccagAGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATT
EST: GAAAACAGAGAGAAGGCTTTGATGCTG AGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACNTGACCGCACAAT
genomic: GAAAACAGAGAGAAGGCTTTGATGCTGgtaaatctgc ... atttatccagAGCTACCAACTCGCTGAAGACTTAGCTAGAGCATTTAC-TGAGCGCACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGGAGGTTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGATGCTGgtaaatctgcttttactgcacattttcttggcgagcttaacttagtgtctaacttgtgtgacatttatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG