1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TCTATTCCAACTTTCTTTGCCTCTGAACTTCCTTGGAAGTGTCTATCGAGAATCTAGGCAAAGCCTGATTGACATGAAGTCTATGTTTCAATTGCTTGAGgtaaaaacttcgtgactatctgttgggggcctaaatggcttgcagtttcagtttcatcctttcacaaccccagaaacttcattgctgttatttcactttgttcag
species | Oryza sativa |
transcript | LOC_Os06g03770.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AATCTAGGCAAAGCCTGATTGACATGAAGTCTATGTTTCAATTGCTTGAG GAAAAACCTGGAATAAAGGATGAACCACATGCACAGCCTTTGCAGTTCAAGEST: gi|33804176|gb|CF327963.1|CF327963
genomic: AATCTAGGCAAAGCCTGATTGACATGAAGTCTATGTTTCAATTGCTTGAGgtaaaaactt ... ctttgttcagGAAAAACCTGGAATAAAGGATGAACCACATGCACAGCCTTTGCAGTTCAAG
EST: AATCTAGGCAAAGCCTGATTGACATGAAGTCTATGTTTCAATTGCTTGAG GAAAAACCTGGAATAAAGGATGAACCACATGCACAGCCTTTGCAGTTCAAGEST: gi|58695244|gb|CK083931.1|CK083931
genomic: AATCTAGGCAAAGCCTGATTGACATGAAGTCTATGTTTCAATTGCTTGAGgtaaaaactt ... ctttgttcagGAAAAACCTGGAATAAAGGATGAACCACATGCACAGCCTTTGCAGTTCAAG
EST: CTGATTGACATGAAGTCTATG-TTCAATTGCTTGAG GAAAAACCTGGAATAAAGGATGAACCACATGCACAGCCTTTGCAGTTCAAGEST: gi|313079787|gb|HO213226.1|HO213226
genomic: CTGATTGACATGAAGTCTATGTTTCAATTGCTTGAGgtaaaaactt ... ctttgttcagGAAAAACCTGGAATAAAGGATGAACCACATGCACAGCCTTTGCAGTTCAAG
EST: AATCTAGGCAAAGCCTGATTGACATGAAGTCTATGTTTCAATTGCTTGAG GAAAAACCTGGAATAAAGGATGAACCACATGCACAGCCTTTGCAGTTCAAG
genomic: AATCTAGGCAAAGCCTGATTGACATGAAGTCTATGTTTCAATTGCTTGAGgtaaaaactt ... ctttgttcagGAAAAACCTGGAATAAAGGATGAACCACATGCACAGCCTTTGCAGTTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTATTCCAACTTTCTTTGCCTCTGAACTTCCTTGGAAGTGTCTATCGAGAATCTAGGCAAAGCCTGATTGACATGAAGTCTATGTTTCAATTGCTTGAGgtaaaaacttcgtgactatctgttgggggcctaaatggcttgcagtttcagtttcatcctttcacaaccccagaaacttcattgctgttatttcactttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG