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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGGAGGAACTTTGATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctactgaggcttcttttagatgtaattgtttattgctattatttttgtaaattatgatgccatcttccatattggaactttttccatgctgacaa...

Basic information

species Oryza sativa
transcript LOC_Os06g03760.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G012284_T01 (Zea mays), 5'ss of exon 9
ATGGGGAGGAACTTTGATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctactgaggc-ttcttttagatgtaattgtttattgctattatttttgt---aaattatgatgccatcttccatattggaactttttccatgctgacaa
||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||| |   | || ||| ||| |    |  ||||       || |||| | |   || || |  |   ||||| ||| ||||||       | |  | |   
ATGGGGAGGCACTTTAATGAACTCCTTCCTGTTTAATGTTGGGCTCATACTACTTTGCTCCATCAGgtatgccatcaatgccttccttttggcacacatgttaggcaacatgatttgtatctgaagttgttttttaatctttcat-ttggaaagacaatcgtagtca---

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 11
ATGGGGAGGAACTTTGATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctactgaggcttcttttagatgtaa--ttgtttattgctat-tatttttgtaaattat--gatgccatcttccatat-tggaactttttccatgctgacaa
||||||||| ||||| |||||||| ||  ||||||||||||| ||||| ||||||||||||||||||| ||  |   | || |   ||| |||| |  ||||   |||  |  | |  ||  |   ||   |||    | || ||||| || | | || |   |        
ATGGGGAGGCACTTTAATGAACTCCTTTTTGTTTAATGTTGGGCTCATACTACTTTGCTCCATCAGgtatgacatcaatgccttccttaaatgttacgttgtaagttgtaacctgtcattacagggtaatggatattttattacatatctgcagcattatttgtat------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89176031|gb|CI043052.1|CI043052
EST:     TAATGTTGGACTCATCCTACTTTGCTCCATCAG                         TGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
genomic: TAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctact ... tcttttgcagTGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
EST: gi|87019966|gb|CI299364.1|CI299364
EST:     ATGTTGGACTCATCCTACTTTGCTCCATCAG                         TGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
genomic: ATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctact ... tcttttgcagTGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
EST: gi|58684950|gb|CK073637.1|CK073637
EST:     ATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAG                         TGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
genomic: ATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctact ... tcttttgcagTGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
EST: gi|86484582|gb|CI127215.1|CI127215
EST:     CTGTTGAATGTTGGACTCATCCTACTTTGCTCCATCAG                         TGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
genomic: CTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctact ... tcttttgcagTGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
EST: gi|5667175|gb|AU077435.1|AU077435
EST:     ATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAG                         TGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
genomic: ATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctact ... tcttttgcagTGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
EST: gi|88961963|gb|CI097116.1|CI097116
EST:     ATGAACTCGTTCCTGTTTAATGTTGGACTCATCATACTTTGCTCCATCAG                         TGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
genomic: ATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctact ... tcttttgcagTGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
EST: gi|55827892|gb|AU063117.2|AU063117
EST:     ATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAG                         TGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAG-AACCTG
genomic: ATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctact ... tcttttgcagTGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAAC-TG
EST: gi|89163461|gb|CI100351.1|CI100351
EST:     CCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAG                         TGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
genomic: CCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctact ... tcttttgcagTGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
EST: gi|29679858|gb|CB676133.1|CB676133
EST:     ATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAG                         TGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC
genomic: ATGAACTCGTTCCTGTTTAATGTTGGACTCATCCTACTTTGCTCCATCAGgtgtgctact ... tcttttgcagTGTGATTCAGTTCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGC