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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacctcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag

Basic information

species Oryza sativa
transcript LOC_Os06g02380.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G095252_T02 (Zea mays), 5'ss of exon 5
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacctcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag
|||||||||||||||||||||||||||||| ||||| ||| || | || ||||||| ||| || ||||||||||| |  |||||||| ||||||||||||||  |  | ||  ||||   | ||| |||          ||||   ||| | | |     | | | | ||||      | |  |||  ||  || |      ||||                                                                   
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGATGCACCCTTTTGCGGCTTGCAGCTAAAGTCGATGCCATCAAGGATACACTGGAGAACGATGAGCAGAAGgt--aagaacaaaatctg--tgattgatta-----aaaagagtagactacagagcagccttgttataggttcgag---tataactgacacgctgaagtaccattag-------------------------------------------------------------------

upper sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G083716_T03 (Zea mays), 5'ss of exon 10
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacctcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag
 ||||||||||||||||||||||||||||||||||||||| || | || ||||||| ||| |||||||||||||| |  |||||||| || |||||||||||  | || ||  |||| |   || |  |  ||   ||  |      |  |  |  ||   | |||   | || |   |    ||    ||     | ||   |   | |                                                               
CGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGCTTGCAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgt--aaaaacaaaatctgc--aatcccgtaattcatttgaaagaggatggaggcaacagagcacaaccttgctataggttcaactatggctgacattctgaactgacattag-------------------------------------------------------------

upper sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA08G18760.3 (Glycine max), 5'ss of exon 10
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacc-tcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag
    ||||||||||||||||||||||| || ||||||||||||||||| ||| | |  || || || |||||||| | ||| || ||||||||  | || ||         | || || || ||  || |      |   ||| | ||  |     | || | |      ||  ||  | |    |||| ||   | | ||  ||  || | | | ||   |  | ||  |   ||| || |    | |  | | |   | ||| |        
----GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGA-

upper sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA08G18760.1 (Glycine max), 5'ss of exon 10
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacc-tcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag
||| ||||||||||||||||||||||| || ||||||||||||||||| ||| | |  || || || |||||||| | ||| || ||||||||  | || ||         | || || || ||  || |      |   ||| | ||  |     | || | |      ||  ||  | |    |||| ||   | | ||  ||  || | | | ||   |  | ||  |   ||| || |    | |  | | |   |              
TGTAGAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtga------gtcatttatttgat--atggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgt-tgttttcaaattcaac-tccaaacatggtcatgacttcaaaattgtgtttaatttttgcag--------------

upper sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 10
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgtt-cgagtgttctataaacctcatctctcaaaagttctg---tttttgtgcctgctactatgtatatgggttagaa-atgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag
||| ||||| |||||||| |||||||| || ||||||||||||||||| ||| | |  || ||| | |||||||| | ||| || ||||||||  | || ||     |   | || |  | |    |   |    ||| |  |  |  | | |   |  | | |     | |  |   |  || || ||| | || |  |      |   |   ||  |||   || ||     |  | | ||||||  |||  |                       
TGTAGAGGAGGGTATTGTAGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcat--ttatttgatatggagagaatacaagtttcttggatgttgtgatatttttgttttgggtgctgggaaatgcttctgactgttgctttcaactcaactcctagcgtggtcat---gacttcaaaattgtgtttaattg--ttgcag-----------------------

upper sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 11
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacctcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag
|||||||||||||||||| |||||||| || |||||||| ||  | || ||| | |  || || ||||||||||| | ||| || ||||||||  | |||||  |    ||  ||| |   | || |   ||||||        ||      ||  ||| |   |  | |||   | |   |                                                                                           
TGTTGAGGAAGGTATTGTCGTTGGTGGTGGTTGCACTCTGCTCCGGCTTGCATCAAAGGTCGATGCCATCAAGGATACCCTTGAAAATGATGAAGAAAAGgtg-attggcaaaatcaagaattttgaaattttttgcaaattgcttgctcttactgcattttcaactatttcccatctctag-------------------------------------------------------------------------------------------

upper sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
lower sequence: AT1G55490.1 (Arabidopsis thaliana), 5'ss of exon 11
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacctcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag
||| ||||||||||||||||||||||| || |||||||| ||  | || ||  | |  ||||| ||||| || | ||  || || ||||||||  | |||||    || ||  ||| | | |    ||| ||       ||   |||  |    || |  |  |  | | |    ||| |                                                                                             
TGTCGAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTGCTTCGTCTTGCTTCCAAGGTTGATGCCATTAAAGCCACGCTTGATAATGATGAAGAAAAGgta---aatca--atcaagtcttcagatt-ttaactcatgaaccttcggtttctctaactttgctgatgattccctttag---------------------------------------------------------------------------------------------

upper sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 11
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacctcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag
|||||||||||| |||||||| ||||| ||||||||||| |||||||| ||  | |  || || |||||||||||||  || || ||||||||| | |||||  | |    ||  ||   ||    || |  ||||| | | |    |          | || ||| ||||    |  ||       |  |    || ||       | || |||      | |  || |||| |  || ||   |  || ||  |||||             
TGTTGAGGAAGGGATTGTTGTAGGTGGTGGGTGCACTCTCCTGAGACTTGCCTCAAAGGTGGATGCCATCAAGGACACGCTTGATAATGATGAGGAAAAGgtg-atacttgtgg-ctgtgttcaatatgggatttgtcc-aataccttgagttttggttttcccaatagtttgaatcatgctgaatgtgttcaaaatgtgtcaatatattggccaggatatagtgtttatcctcttaaagtggact--tgaattgattgcag-----------

upper sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv09s0002g03930.t01 (Vitis vinifera), 5'ss of exon 10
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacctcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag
 ||||||||||||||||| |||||||| ||||||||  |  || | || ||||| | |||||| || ||||| ||||  || || | ||||||||| |||||          |||  | || |     |   | ||        || |||     | |||| |   |||   | |    |||| | |   | ||  | |    |    ||| |    || |||   | ||    |   | ||| | |  |                       
CGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGTCTAGCAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAGgt----------gatacatttaaacttatacatatg-------attatattgtttttatcttttggaaggggtataaaagtgcttacacttttgcttctaacctg---atgtcttgatctaatgcttggtttactgggaatgattggcag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627635|gb|CB632646.1|CB632646
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29625231|gb|CB630242.1|CB630242
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29622749|gb|CB627760.1|CB627760
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|58693690|gb|CK082377.1|CK082377
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|58670426|gb|CK059112.1|CK059112
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29673297|gb|CB669572.1|CB669572
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29661803|gb|CB658078.1|CB658078
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29618035|gb|CB623047.1|CB623047
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29634248|gb|CB639257.1|CB639257
EST:     GAGTTGACGCCATCAAGGCCAAACTTGGAGAATTATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: GAGTTGACGCCATCAAGGAC-AACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|86499526|gb|CI142159.1|CI142159
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAATGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|86487425|gb|CI130058.1|CI130058
EST:     TGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: TGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|3761242|gb|C98490.1|C98490
EST:     CCATCAAGGACAACCTGGAGAATGATGACCAGAAG                         NTTGGAGCTGAAATTGTAAGGAGANCGCTGAGCTACCCGCTTAAATTGATT
genomic: CCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|88829359|gb|CI074229.1|CI074229
EST:     CTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29657689|gb|CB653964.1|CB653964
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29615270|gb|CB620282.1|CB620282
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTCATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29625766|gb|CB630777.1|CB630777
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29683173|gb|CB679448.1|CB679448
EST:     CAGCTAGAGTTGACGCCATCAAGGACACCCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29624254|gb|CB629265.1|CB629265
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|3761784|gb|C99032.1|C99032
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|6934892|gb|AU082429.1|AU082429
EST:     AGCTAGAGTTGNCGCCATTCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTANGGAGANCGCTGAGCTACCCGCTTAAATTGATT
genomic: AGCTAGAGTTGACGCCA-TCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|88828182|gb|CI000291.1|CI000291
EST:     AACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: AACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|2801013|gb|AA754307.1|AA754307
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29680784|gb|CB677059.1|CB677059
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29627873|gb|CB632884.1|CB632884
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29616041|gb|CB621053.1|CB621053
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|86495883|gb|CI138516.1|CI138516
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|702958|gb|D49249.1|D49249
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29628205|gb|CB633216.1|CB633216
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCATAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|6934805|gb|AU082342.1|AU082342
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|86417592|gb|CI031801.1|CI031801
EST:     AGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: AGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29689313|gb|CB685588.1|CB685588
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|86854677|gb|CI258970.1|CI258970
EST:     GCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: GCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29614381|gb|CB619394.1|CB619394
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|701315|gb|D47606.1|D47606
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|86413936|gb|CI068143.1|CI068143
EST:     GGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: GGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|16753384|gb|BM037777.1|BM037777
EST:     TGATGACCAGAAG                         GTTGGA-CTGAAATTGTAAGGAGAGC-CTGAGCTACCCGCCTTAAATTGAN
genomic: TGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCG-CTTAAATTGA-
EST: gi|88983089|gb|CI020653.1|CI020653
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|58689772|gb|CK078459.1|CK078459
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|6934895|gb|AU082432.1|AU082432
EST:     ACCTAGATTTGACGCCATCCAAGGACAACCTGGAGAATGATGAGCAGAAG                         NTTGGAGCTGAAATTGTAAAGGAGAGCGCTGAGCTACCCGCTTAAATTGAT
genomic: AGCTAGAGTTGACGCCAT-CAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGT-AAGGAGAGCGCTGAGCTACCCGCTTAAATTGAT
EST: gi|2801009|gb|AA754303.1|AA754303
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29658823|gb|CB655098.1|CB655098
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAAGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|7212775|gb|C99033.2|C99033
EST:     CAGCTANAGTTGACGCCATCAAGGNCAACTTGGAGAATGATGAGCAGAAG                         GTTGAAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29657719|gb|CB653994.1|CB653994
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|88844914|gb|CI022268.1|CI022268
EST:     ACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: ACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|89173511|gb|CI041404.1|CI041404
EST:     TGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: TGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|218494239|gb|FG952759.1|FG952759
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29617291|gb|CB622303.1|CB622303
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|58602788|gb|CK013316.1|CK013316
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|58690595|gb|CK079282.1|CK079282
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         CTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29616042|gb|CB621054.1|CB621054
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|29626463|gb|CB631474.1|CB631474
EST:     CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAG                         GTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
genomic: CAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT
EST: gi|6934809|gb|AU082346.1|AU082346
EST:     AGCTAGAGTTGACGCCATCCAAGGNCAACCTGGAGAATGATGAGCAGAAG                         GTTGGANCTGAAATTGTAAGGAGANCGCTGAGCTACCCGCTTAAATTGATT
genomic: AGCTAGAGTTGACGCCAT-CAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaacc ... aactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacctcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG