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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTGCAAACCGCCTGCTGCACTCCAAGCAAACCATTCCTCACTACTATCTGACAGTTGATACTCGTGTTGACAAACTTATTAAgtatggtttcaatcaaaactttgttcaagcaatttagtattttatcaacctgtacccaagaacatattttgtgaacctctggttgattactagatgaacc...

Basic information

species Oryza sativa
transcript LOC_Os06g01630.6
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|702339|gb|D48630.1|D48630
EST:     ATTCCTCACTACTATCTGACAGTTGATACTCGTGTTGACAAACTTATTAA                         GTTGCGAAGTGAGTTGAATCCTCTGCAGGATACCTCTGGTGGCAAGAAGAT
genomic: ATTCCTCACTACTATCTGACAGTTGATACTCGTGTTGACAAACTTATTAAgtatggtttc ... tatgttccagGTTGCGAAGTGAGTTGAATCCTCTGCAGGATACCTCTGGTGGCAAGAAGAT
EST: gi|38477221|gb|CF961354.1|CF961354
EST:     GTTGATACCTCGTGTTGACAAACTTATTAA                         GTTGCGAAGTGAGTTGAATCCTCTGCAGGATACCTCTGGTGGGGAGAAGAT
genomic: GTTGATA-CTCGTGTTGACAAACTTATTAAgtatggtttc ... tatgttccagGTTGCGAAGTGAGTTGAATCCTCTGCAGGATACCTCTGGTGGCAAGAAGAT
EST: gi|2442983|gb|C74754.1|C74754
EST:     ATTCCTCACTACTATCTGACAGTTGATACTCGTGTTGACAAACTTATTAA                         GTTGCGAAGTGAGTTGAATCCTCTGCAGGATACCTCTGGTGGCAAGAAGAT
genomic: ATTCCTCACTACTATCTGACAGTTGATACTCGTGTTGACAAACTTATTAAgtatggtttc ... tatgttccagGTTGCGAAGTGAGTTGAATCCTCTGCAGGATACCTCTGGTGGCAAGAAGAT