1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTAAATCCTGCTGCCATACGAGAGGTATTTGAAGCTCGGGCTCTCAGGATGGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAGgttggtattgcgccatatgattattaatcgagaataaaatatagaacagaaaccatagtgcatttgcatgtagtttcgtattaatttccgtggtctattataagaaattgcatagatgatgatggtgtgcgttgctgaatatgcag
species | Oryza sativa |
transcript | LOC_Os06g01390.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAG GGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCCEST: gi|58672794|gb|CK061480.1|CK061480
genomic: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAGgttggtattg ... gaatatgcagGGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCC
EST: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAG GGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCCEST: gi|58670583|gb|CK059269.1|CK059269
genomic: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAGgttggtattg ... gaatatgcagGGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCC
EST: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAG GGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCCEST: gi|218498819|gb|FG964003.1|FG964003
genomic: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAGgttggtattg ... gaatatgcagGGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCC
EST: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAG GGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCCEST: gi|29641670|gb|CB646677.1|CB646677
genomic: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAGgttggtattg ... gaatatgcagGGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCC
EST: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAG GGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCCEST: gi|27410222|gb|CA923292.1|CA923292
genomic: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAGgttggtattg ... gaatatgcagGGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCC
EST: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGTCAAGAAGAAG GGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCCEST: gi|58598568|gb|CK009096.1|CK009096
genomic: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAGgttggtattg ... gaatatgcagGGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCC
EST: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAG GGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCCEST: gi|87023655|gb|CI286406.1|CI286406
genomic: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAGgttggtattg ... gaatatgcagGGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCC
EST: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAG GGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCC
genomic: GGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAGgttggtattg ... gaatatgcagGGTTTTATGAGCTATCCCCTGATCTGCTTGAGGTGGCGGTGGCCCATATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAAATCCTGCTGCCATACGAGAGGTATTTGAAGCTCGGGCTCTCAGGATGGCGGTGAATTGTGCCCAGAACATAAACAAGGCGCCAAGCCAAGAAGAAGgttggtattgcgccatatgattattaatcgagaataaaatatagaacagaaaccatagtgcatttgcatgtagtttcgtattaatttccgtggtctattataagaaattgcatagatgatgatggtgtgcgttgctgaatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG