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GTGATTTGCTGAAGTTGTTGGATATTTCTTCTGCTGAAAATGTTTTACCTACAACATATGGATGTTTGCAGCCCCCTCTTGGAAAACACCGCTTGAAGgtatggcttcatgtagtgagtttttgtaattgatagtttgtgtgcatgtttctttatattttgctcaagctaatccttctttgctgaataccctggatct...
species | Oryza sativa |
transcript | LOC_Os05g51490.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTACAACATATGGGTGTTTGCAGCCCCCTCTTGGAAAACACCGCTTGAAG ATTGTGGAATTCATCTCTGTTTTGCTGACGATTGGTAGTGAAACTGCGGAAEST: gi|58611304|gb|CK039016.1|CK039016
genomic: CTACAACATATGGATGTTTGCAGCCCCCTCTTGGAAAACACCGCTTGAAGgtatggcttc ... ttcctcccagATTGTGGAATTCATCTCTGTTTTGCTGACGATTGGTAGTGAAACTGCGGAA
EST: CTACAACATATGGATGTTTGCAGCCCCCTCTTGGAAAACACCGCTTGAAG ATTGTGGAATTCATCTCTGTTTTGCTGACGATTGGTGGTGAAACTGCGGAAEST: gi|58689163|gb|CK077850.1|CK077850
genomic: CTACAACATATGGATGTTTGCAGCCCCCTCTTGGAAAACACCGCTTGAAGgtatggcttc ... ttcctcccagATTGTGGAATTCATCTCTGTTTTGCTGACGATTGGTAGTGAAACTGCGGAA
EST: CTACAACATATGGATGTTTGCAGCCCCCTCTTGGAAAACACCGCTTGAAG ATTGTGGAATTCATCTCTGTTTTGCTGACGATTGGTAGTGAAACTGCGGAA
genomic: CTACAACATATGGATGTTTGCAGCCCCCTCTTGGAAAACACCGCTTGAAGgtatggcttc ... ttcctcccagATTGTGGAATTCATCTCTGTTTTGCTGACGATTGGTAGTGAAACTGCGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATTTGCTGAAGTTGTTGGATATTTCTTCTGCTGAAAATGTTTTACCTACAACATATGGATGTTTGCAGCCCCCTCTTGGAAAACACCGCTTGAAGgtatggcttcatgtagtgagtttttgtaattgatagtttgtgtgcatgtttctttatattttgctcaagctaatccttctttgctgaataccctggatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG