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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATCATTCTTTGTGCTCTATTCTACATATGCCCTTTGTTTCTATGTAGGAGCCAAGTTCATGCTTGATGGCAAGGCCACATTCACTGAAATATTCAGGgtgagagaactctcaagctgattcgctttcagtcgttttgtgttgtgtaatttctaatgtgttcctctctag

Basic information

species Oryza sativa
transcript LOC_Os05g47490.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g47490.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G082385_T01 (Zea mays), 5'ss of exon 10
CATATCATTCTTTGTGCTCTATTCTACATATGCCCTTTGTTTCTATGTAGGAGCCAAGTTCATGCTTGATGGCAAGGCCACATTCACTGAAATATTCAGGgtgagaga-actctcaagctgattcgctttcagtcgt-tttgtgttgtgtaatttctaat----gtgttcctctctag
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CTTGTCATTCTTCGTGCTTTACTCCACATATGCCCTCTGCTTCTACGTTGGAGCAAATTTTATGCTTGATGGCAAGGCCACGTTCACCGATGTGTTCAGAgtaagcaacactgtgcagatactaagcttcaagttccgctcgcgttatgccatagcaaactgccgtgttcttctgcag