1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTACTGTATCCCTTGATGATACTATCATTCTAGATGGTGGAGGCGACAAACAGCAGATAGAGGAGAGGTGTCAACAGgtgctgcaataaaattgtcactcttgaccttcatcccaactatctagataatagtggccggattctcctttgatagaaattaaattgtttgttatgtgaatgcccttaacag
species | Oryza sativa |
transcript | LOC_Os05g46290.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGCGACAAACAGCAGATAGAGGAGAGGTGTCAACAG CTTAGAGAATCAATGGACAAAAGCACTGCTGTATTTGACAAAGAAAAGGCTEST: gi|33793593|gb|CF322681.1|CF322681
genomic: GGCGACAAACAGCAGATAGAGGAGAGGTGTCAACAGgtgctgcaat ... cccttaacagCTTAGAGAATCAATGGACAAAAGCACTGCTGTATTTGACAAAGAAAAGGCT
EST: TCTAGATGGTGGAGGCGACAAACAGCAGATAGAGGGAGAGGTGTCAACAG CTTAGAGAATCAATGGACAAAAGCACTGCTGTATTTGACAAAGAAAAGGCTEST: gi|58675869|gb|CK064556.1|CK064556
genomic: TCTAGATGGTGGAGGCGACAAACAGCAGATAGAGG-AGAGGTGTCAACAGgtgctgcaat ... cccttaacagCTTAGAGAATCAATGGACAAAAGCACTGCTGTATTTGACAAAGAAAAGGCT
EST: TTCTAGATGGTGGAGGCGACAAACAGCAGATAGAGGAGAGGTGTCAACAG CTTAGAGAATCAATGGACAAAAGCACTGCTGTATTTGACAAAGAAAAGGGT
genomic: TTCTAGATGGTGGAGGCGACAAACAGCAGATAGAGGAGAGGTGTCAACAGgtgctgcaat ... cccttaacagCTTAGAGAATCAATGGACAAAAGCACTGCTGTATTTGACAAAGAAAAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTGTATCCCTTGATGATACTATCATTCTAGATGGTGGAGGCGACAAACAGCAGATAGAGGAGAGGTGTCAACAGgtgctgcaataaaattgtcactcttgaccttcatcccaactatctagataatagtggccggattctcctttgatagaaattaaattgtttgttatgtgaatgcccttaacag
- - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG