1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgctatcccctcgtgttatttgtatggttgaaccatatatcagttttatttggaaatcttggtctgcctatggtttattacacattctatctcct...
species | Oryza sativa |
transcript | LOC_Os05g42330.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGTCACTGCTGAGCATTGGTGTCATTCAG CAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGTEST: gi|86831256|gb|CI297525.1|CI297525
genomic: AGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgcta ... caacatgcagCAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGT
EST: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG CAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGTEST: gi|88986093|gb|CI033422.1|CI033422
genomic: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgcta ... caacatgcagCAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGT
EST: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG CAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGTEST: gi|88964067|gb|CI032984.1|CI032984
genomic: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgcta ... caacatgcagCAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGT
EST: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG CAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGTEST: gi|33803682|gb|CF327716.1|CF327716
genomic: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgcta ... caacatgcagCAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGT
EST: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG CAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCEST: gi|89188347|gb|CI115596.1|CI115596
genomic: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgcta ... caacatgcagCAAGTATACATGTACTTCCGTGGAAGTGGAAAAGC
EST: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG CAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGTEST: gi|86595040|gb|CI260279.1|CI260279
genomic: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgcta ... caacatgcagCAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGT
EST: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG CAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGTEST: gi|58686999|gb|CK075686.1|CK075686
genomic: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgcta ... caacatgcagCAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGT
EST: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG CAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGTEST: gi|33803684|gb|CF327717.1|CF327717
genomic: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgcta ... caacatgcagCAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGT
EST: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG CAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGTEST: gi|4881016|gb|AU065315.1|AU065315
genomic: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgcta ... caacatgcagCAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACGT
EST: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG CAAGTATACATGGTACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACG
genomic: GGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgcta ... caacatgcagCAAGTATACATG-TACTTCCGTGGAAGTGGAAAAGCCGCAGAGATGAAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgctatcccctcgtgttatttgtatggttgaaccatatatcagttttatttggaaatcttggtctgcctatggtttattacacattctatctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcg