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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAAGACAACTGTGAATACTTGCGTTCTGGACCACCTTTTCTTATATTTCTTCATCCTGCTTTAGGTCCATTTTGGGATATCACAAGGCAGAAGgtatgttactgagttactgtaattgtgtaacagcaaatatgaaaacatgactctgaggctttcttctctaaacgaacatattaactacctgcctattcca...

Basic information

species Oryza sativa
transcript LOC_Os05g39230.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g39230.1 (Oryza sativa), 5'ss of exon 12
lower sequence: AC197705.4_FGT011 (Zea mays), 5'ss of exon 16
GTCAAAGACAACTGTGAATACTTGCGTTCTGGACCACCTTTTCTTATATTTCTTCATCCTGCTTTAGGTCCATTTTGGGATATCACAAGGCAGAAGgtatgttactgagt-tactg--taattgtg-taacagcaaatatgaaaacatgactctgaggctttcttctctaaacga-acatattaactacctgcctattcca
||  |||||||| |||||||  ||| ||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||| | | || |||||||| || ||  |  | ||  |||   || ||   | |  | |     |     | | ||    | |  ||||   || | || | | ||    ||||      
GTTCAAGACAACAGTGAATATATGCATTCTGGACCGCCGTTTCTCATATTTCTTCATCCTGCTTTAGGCCCATTTTGGGATATCATACGACAAAAGgtatgctattgtatacattgggtaaacatgatatttgtatctttcttctctccgttattagataatttattctacctgagatatgtgagctgtaagcctg-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27547089|gb|CA765265.2|CA765265
EST:     TATTTCTTCATCCTGCTTTAGGTCCATTTTGGGATATCACAAGGCAGAAG                         TTTGTAGGTGGCTCGGTCTCTCAAGGTTCAGAATTGCAAATAGAGGTGGCA
genomic: TATTTCTTCATCCTGCTTTAGGTCCATTTTGGGATATCACAAGGCAGAAGgtatgttact ... gtacatgcagTTTGTAGGTGGCTCGGTCTCTCAAGGTTCAGAATTGCAAATAGAGGTGGCA
EST: gi|29623422|gb|CB628433.1|CB628433
EST:     CTTTAGGTCCATTTTGGGATATCACAAGGCAGAAG                         TTTGTAGGTGGCTCGGTCTCTCAAGGTTCAGAATTGCAAATAGAGGTGGCA
genomic: CTTTAGGTCCATTTTGGGATATCACAAGGCAGAAGgtatgttact ... gtacatgcagTTTGTAGGTGGCTCGGTCTCTCAAGGTTCAGAATTGCAAATAGAGGTGGCA