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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTCCGACGTGTTCCACCTGATGACTGGCATGTGGGCGGCGCCGGCCGAGCGGTGCTTCCTCTGGATGGCCGGTTTCCGGCCATCAGAAATTCTCAAAgtagacacacaacataattttttttttcagtaagacacgcacgattattaaggcatgctaaattcttggccttttttttttttgtctatgatttgcctttttcaccag

Basic information

species Oryza sativa
transcript LOC_Os05g37170.4
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g37170.4 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G000842_T03 (Zea mays), 5'ss of exon 10
CAGCTCCGACGTGTTCCACCTGATGACTGGCATGTGGGCGGCGCCGGCCGAGCGGTGCTTCCTCTGGATGGCCGGTTTCCGGCCATCAGAAATTCTCAAAgtagacacacaacataattttttttttcagtaagacacgcacgattattaaggcat--gctaaattcttggccttttttttttttgtctatgatttgcctttttcaccag---
 || ||||||||||||||||||||||| ||| |||||||| |  |||||||||| ||||||||||||||||  || ||||| || || ||||| ||||| ||     |    | |  | ||| |     ||     |   |  |  |  | |   |    ||| |  ||      |       |  | ||| || ||  | | | |||||   
AAGATCCGACGTGTTCCACCTGATGACCGGCCTGTGGGCGACCACGGCCGAGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAGgt--ttccggctctttttatttctccgtggtttattatatattagcagcacgctgttaattaattaattaattaatcgccgggtcttttat-atatgtttgtgtgaccagcag

upper sequence: LOC_Os05g37170.4 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G000842_T04 (Zea mays), 5'ss of exon 9
CAGCTCCGACGTGTTCCACCTGATGACTGGCATGTGGGCGGCGCCGGCCGAGCGGTGCTTCCTCTGGATGGCCGGTTTCCGGCCATCAGAAATTCTCAAAgtagacacacaacataattttttttttcagtaagacacgcacgattattaaggcat--gctaaattcttggccttttttttttttgtctatgatttgcctttttcaccag
 || ||||||||||||||||||||||| ||| |||||||| |  |||||||||| ||||||||||||||||  || ||||| || || ||||| ||||| ||     |    | |  | ||| |     ||     |   |  |  |  | |   |    ||| |  ||      |       |  | ||| || ||  | | | |||||
AAGATCCGACGTGTTCCACCTGATGACCGGCCTGTGGGCGACCACGGCCGAGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAGgt--ttccggctctttttatttctccgtggtttattatatattagcagcacgctgttaattaattaattaattaatcgccgggtcttttat-atatgtttgtgtgaccag