1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGAGAGGTACATTGTTACATATAACCCAACAAAGGACAAGGTATATGCTTTGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattgataacaaggttaacaactttggcaatgccatactggtcaaatttgtttgcattatatcatcctaatcaaatgtgttttggtttacag
species | Oryza sativa |
transcript | LOC_Os05g34650.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCNNNGCCGCTTTCCAT GCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAANGCNEST: gi|33666778|gb|CF297745.1|CF297745
genomic: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattg ... tggtttacagGCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCA
EST: TGCTCAAGGACTAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCAT GCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCAEST: gi|29645587|gb|CB650594.1|CB650594
genomic: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattg ... tggtttacagGCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCA
EST: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCAT GCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCAEST: gi|117223389|gb|CT846265.1|CT846265
genomic: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattg ... tggtttacagGCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCA
EST: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCAT GCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCAEST: gi|218496920|gb|FG952344.1|FG952344
genomic: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattg ... tggtttacagGCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCA
EST: TGCTCAAGGACCAAGCAAAGCCGGATGATATTCTCAAAGCCGCTTTCCAT GCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCAEST: gi|86910785|gb|CI294785.1|CI294785
genomic: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattg ... tggtttacagGCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCA
EST: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCAT GCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCAEST: gi|58593357|gb|CF991665.1|CF991665
genomic: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattg ... tggtttacagGCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCA
EST: TGCTCAAGGACCAAGCAAAGCCGGATGATATTCTCAAAGCCGCTTTCCAT GCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCAEST: gi|58675486|gb|CK064173.1|CK064173
genomic: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattg ... tggtttacagGCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCA
EST: TGCTCAAGGACCAAGCAAAGCCGGATGATATTCTCAAAGCCGCTTTCCAT GCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCAEST: gi|58600585|gb|CK011113.1|CK011113
genomic: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattg ... tggtttacagGCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCA
EST: TGCTCAAGGACCAAGCAAAGCCGGATGATATTCTCAAAGCCGCTTTCCAT GCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCA
genomic: TGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattg ... tggtttacagGCACATGTATTACTACATTTTATTAATGCATCACATGCTAACTTGAATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAGGTACATTGTTACATATAACCCAACAAAGGACAAGGTATATGCTTTGCTCAAGGACCAAGCAAAGCCAGATGATATTCTCAAAGCCGCTTTCCATgtaagtattgataacaaggttaacaactttggcaatgccatactggtcaaatttgtttgcattatatcatcctaatcaaatgtgttttggtttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG