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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGATCTACTTGGTCAAGTAGATGAGCTATTCTTTGATATCTATGATAGATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttctacggtgtatgattttgcacttgaacattaagtttggttgtgttggagtataatagtataaacatctctggttgttattctctctgcag

Basic information

species Oryza sativa
transcript LOC_Os05g34540.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g34540.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G318942_T01 (Zea mays), 5'ss of exon 8
GATTGATCTACTTGGTCAAGTAGATGAGCTATTCTTTGATATCTATGATAGATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttctacggtgtatgattttgcacttgaacattaagtttggttgtgttggagtataatagtataaacatctctggttgttattctctctgcag
 |||||||||||||||   ||||||||| | |||| |||||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||| || ||||| | | | || |||| |     | | ||||||| |  ||   ||  ||  |  ||  || ||  ||  | ||||| ||||  || |  |||||
AATTGATCTACTTGGTTCTGTAGATGAGATTTTCTATGATATCTATGACAGATATGAACCAGTGAATGAACCATCTCTTGATAATTGCTTTGTCTCGACAgtaagatttgcagtttatgttagcagaat-gaacatttaacttcactg--tttaaacattctacta--aatttttctggctgtt--tcaccatgcag

upper sequence: LOC_Os05g34540.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G117507_T01 (Zea mays), 5'ss of exon 11
GATTGATCTACTTGGTCAAGTAGATGAGCTATTCTTTGATATCTATGATAGATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttctacggtgtatgattttgcacttgaacattaagtttggttgtgttggagtataatagtataaacatctctggttgttattctctctgcag
 |||||||||||||||   ||||||||| | |||| |||||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||| || ||||| | | | || |||| |     | | ||||||| |  ||   ||  ||  |  ||  || ||  ||  | ||||| ||||  || |  |||||
AATTGATCTACTTGGTTCTGTAGATGAGATTTTCTATGATATCTATGACAGATATGAACCAGTGAATGAACCATCTCTTGATAATTGCTTTGTCTCGACAgtaagatttgcagtttatgttagcagaat-gaacatttaacttcactg--tttaaacattctacta--aatttttctggctgtt--tcaccgtgcag

upper sequence: LOC_Os05g34540.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G077635_T01 (Zea mays), 5'ss of exon 1
GATTGATCTACTTGGTCAAGTAGATGAGCTATTCTTTGATATCTATGATAGATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttctacggtgtatgattttgcacttgaacattaagtttggttgtgttggagtataatagtataaacatctctggttgttattctctctgcag
 |||||||||||||||   ||||||||| | |||| |||||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||| || ||||| | | | || |||| |     | | ||||||| |  ||   ||  ||  |  ||  || ||  ||  | | ||||||||  || |  |||||
AATTGATCTACTTGGTTCTGTAGATGAGATTTTCTATGATATCTATGACAGATATGAACCAGTGAATGAACCATCTCTTGATAATTGCTTTGTCTCGACAgtaagatttgcagtttatgttagcagaat-gaacatttaacttcactg--tttaaacattctacta--aatttttttggttgtt--tcaccgtgcag

upper sequence: LOC_Os05g34540.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G435373_T01 (Zea mays), 5'ss of exon 11
GATTGATCTACTTGGTCAAGTAGATGAGCTATTCTTTGATATCTATGATAGATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttctacggtgtatgattttgcacttgaacattaagtttggttgtgttggagtataatagtataaacatctctggttgttattctctctgcag
 |||||||||||||||   || |||||| |||| | |||||| ||||| ||||||||||| |||||||| |||||||||||||| || |||||| |||| ||||| | | | ||||||| |  |  | | ||||||| |  ||   ||  ||  |  ||  || ||  ||  | | ||| ||||  || |  |||||
AATTGATCTACTTGGTTCTGTGGATGAGATATTATATGATATTTATGACAGATATGAACCAGTGAATGAACCATCTCTTGATAATTGCTTTGTCACAACGgtaagatttgcagtgtatgttaatagaat-gaacatttaactttactg--tttaaacattctacta--aatctttgtggctgtt--tcaccgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88831697|gb|CI369379.1|CI369379
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|29644095|gb|CB649102.1|CB649102
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|88835971|gb|CI371076.1|CI371076
EST:     GATATGAACCCGTGAATGACCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|94362060|gb|CI052859.1|CI052859
EST:     ATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: ATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|218500356|gb|FG959036.1|FG959036
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|27920879|gb|CB096687.1|CB096687
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|29674550|gb|CB670825.1|CB670825
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|86870306|gb|CI319412.1|CI319412
EST:     AATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|88218810|gb|CI216808.1|CI216808
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|88964736|gb|CI084734.1|CI084734
EST:     CCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: CCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|86823510|gb|CI256447.1|CI256447
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|29689602|gb|CB685877.1|CB685877
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|88903083|gb|CI088621.1|CI088621
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACACTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|88906030|gb|CI089616.1|CI089616
EST:     TATGAACCCGTGAATGAGCCATCTCTTGAGAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAA
genomic: TATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|86540663|gb|CI180869.1|CI180869
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|396941200|gb|HO188409.1|HO188409
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|86860319|gb|CI323324.1|CI323324
EST:     CTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: CTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|86431065|gb|CI083488.1|CI083488
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|89180572|gb|CI044851.1|CI044851
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|86864690|gb|CI344233.1|CI344233
EST:     TCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: TCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|11233279|gb|AU164712.1|AU164712
EST:     TGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACANCGGTGACAGACGTTCTTAAT
genomic: TGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|88905861|gb|CI002199.1|CI002199
EST:     ATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: ATATGAACCCGTGAATGAGCCATCTCTTGATAACTG-TTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|89194450|gb|CI116887.1|CI116887
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|38471265|gb|CF955396.1|CF955396
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACTGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|58608603|gb|CK036636.1|CK036636
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|702923|gb|D49214.1|D49214
EST:     GATATGAACCCGTGNATGAGNCATCTCTTGATAACTGTTTTGTCTCAACT                         AGGTATGATGCC-CCNCACATTTTG
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTG
EST: gi|29667501|gb|CB663776.1|CB663776
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|58592473|gb|CF990781.1|CF990781
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTGGTCTCAACT                         AGCTATGATGCCAC
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCAC
EST: gi|89186559|gb|CI048231.1|CI048231
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|86522208|gb|CI162414.1|CI162414
EST:     TGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAA
genomic: TGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|88990851|gb|CI108238.1|CI108238
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|88907442|gb|CI090236.1|CI090236
EST:     ACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: ACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|86890190|gb|CI321367.1|CI321367
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|29631844|gb|CB636853.1|CB636853
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|4880961|gb|AU065260.1|AU065260
EST:     ATATGAACCCGTGAATGAGCCATCTCTTGGATAACTGTTTTGTCTCAACT                         AGCTATGGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAA
genomic: ATATGAACCCGTGAATGAGCCATCTCTTG-ATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATG-ATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAA
EST: gi|88245193|gb|CI245042.1|CI245042
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: gi|218500069|gb|FG955684.1|FG955684
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGAACA-CGGTGACNGACGTTCTTAA
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGA-CAACGGTGACAGACGTTCTTAA
EST: gi|87028068|gb|CI257228.1|CI257228
EST:     GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT                         AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 73 (downstream exon)
Score: 131

GATTGATCTACTTGGTCAAGTAGATGAGCTATTCTTTGATATCTATGATAGATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATATGTATACACTGATCACTGGAAAG




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