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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGATAAGAACTGGTGGGAGATGCAAGAAAGAGGAGATCAAGTTGCTTCAGTACTTGATATAGGGCAAGTTGGTCCAAGGGCAACTTGTCATTGTCAGgtcagtattgaagttaattttgaattaatttgttgatgccaatgaatgagataatgagcaagagtttctcaaagttttggctattttagttatataacta...

Basic information

species Oryza sativa
transcript LOC_Os05g29050.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 11
CATGGATAAGAACTGGTGGGAGATGCAAGAAAGAGGAGATCAAGTTGCTTCAGTACTTGATATAGGGCAAGTTGGTCCAAGGGCAACTTGTCATTGTCAGgtcagtat---------tgaagttaattttgaattaatttgttgatgccaatgaatgaga--taatgagcaagagtttctcaaagttttggctattttagttatataacta
||| || || || |||||||| ||||| ||  ||||  | |||||||||||| |||||||||| || |||||||||||||||| ||| |||| ||||||||||||||          || | |  ||||  || || | | |  |  |||| |||||||     |||  ||| ||||||||   ||      | | ||| ||         
CATTGACAAAAAATGGTGGGAAATGCAGGAGCGAGGCAACCAAGTTGCTTCATTACTTGATATTGGACAAGTTGGTCCAAGGGTAACATGTCGTTGTCAGgtcagtacatggtactctgcaatacatttctaagtagtat-taaacaccaaagaatgaggatccatggacaacagtttctctg-gtgcaatttctcttattt---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11442731|gb|BF430634.1|BF430634
EST:     CAGTACTTGATATAGGGCAAGTTGGTCCAAGGGCAACTTGTCATTGTCAG                         GTAATTAGAAGTGTTGGTCAATGGTCAGCTGGAACCACTCAAATCGAAGGA
genomic: CAGTACTTGATATAGGGCAAGTTGGTCCAAGGGCAACTTGTCATTGTCAGgtcagtattg ... tttggttcagGTAATTAGAAGTGTTGGTCAATGGTCAGCTGGAACCACTCAAATCGAAGGA
EST: gi|33677625|gb|CF305864.1|CF305864
EST:     CAGTACTTGATATAGGGCAAGTTGGTCCAAGGGCAACTTGTCATTGTCAG                         GTAATTAGAAGTGTTGGTCAATGGTCAGCTGGAACCACTCAAATCGAAGGA
genomic: CAGTACTTGATATAGGGCAAGTTGGTCCAAGGGCAACTTGTCATTGTCAGgtcagtattg ... tttggttcagGTAATTAGAAGTGTTGGTCAATGGTCAGCTGGAACCACTCAAATCGAAGGA
EST: gi|218478696|gb|FG959059.1|FG959059
EST:     CAGTACTTGATATAGGGCAAGTTGGTCCAAGGGCAACTTGTCATTGTCAG                         GTAATTAGAAGTGTTGGTCAATGGTCAGCTGGAACCACTCAAATCGAAGGA
genomic: CAGTACTTGATATAGGGCAAGTTGGTCCAAGGGCAACTTGTCATTGTCAGgtcagtattg ... tttggttcagGTAATTAGAAGTGTTGGTCAATGGTCAGCTGGAACCACTCAAATCGAAGGA