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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAGgtatgcagtatttccttctacatttctatggcaggaaactggatatgcttgtttagttcccagtcaatctcttccatatcttaaactgaatggatcgggc...

Basic information

species Oryza sativa
transcript LOC_Os05g29010.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29010.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G439297_T01 (Zea mays), 5'ss of exon 4
ATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAGgtatgcagtatttccttctacatttctatggcagga---aactggatatgc-ttgtttagttcccagtcaatctcttccatatcttaaactgaatggatcgggc
||||||||||||| || ||||  ||||| ||||| ||||||||  | || || ||||| |||||||||||||| ||||||||||| | | ||||||  | ||||||| |||||         |  |||||| || | |   |    |  |  ||     |||||||||   | | | | |    
ATTGGGAAAGAACGTCCCTTGGGAAATCCATCAGTTTTTTCAGAACTTCCTTCCTGCACCCATTGCTGAAAGCATGCAAGgtatggattctttcctatttcatttctgtggcaatgccggcatccatatgcattatgtgaataattgaaacactgcaaaatatcttaagtagca-gaacct---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33796820|gb|CF324277.1|CF324277
EST:     TCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAG                         GAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACC
genomic: TCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAGgtatgcagta ... aatgttgcagGAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACC
EST: gi|3759043|gb|C96742.1|C96742
EST:     AGGTTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCCTGCAAG                         GAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCCAAGAATA
genomic: AGG-TTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAG-CCTGCAAGgtatgcagta ... aatgttgcagGAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGT-CCAAGAATA
EST: gi|10930605|gb|AU160879.1|AU160879
EST:     TCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAA-CCTGCAAG                         GAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACC
genomic: TCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAGgtatgcagta ... aatgttgcagGAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACC