Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtccttggcaaatatataagttcaataagtgaaatgttgcataatttgtattttttgagctattaataatgtttggtcggtgatactggtag

Basic information

species Oryza sativa
transcript LOC_Os05g24550.4
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g24550.4 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv07s0005g02820.t01 (Vitis vinifera), 5'ss of exon 9
CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtccttggcaaatatataagttcaataagtgaaatgttg-cataatttgtattttttgagctattaataatgtttggtcggtgatactggtag
 | |||||||||||||||||||||   ||||||||||||||    |       ||| || | |      |||| |  || || ||   || | | | || || |||| | |   |  |     ||    |   
ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATgtaagattct-------atacaattccccc--ttgaattactgtcacaagaagtttgtctcga-ctcttaacactacatcattttgaatggcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88218705|gb|CI218554.1|CI218554
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|33653560|gb|CF276174.1|CF276174
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86528550|gb|CI168756.1|CI168756
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|38469357|gb|CF953488.1|CF953488
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88269340|gb|CI380638.1|CI380638
EST:     CAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAAACGAATGTGGCATCGAAGA
genomic: CAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCAC-AAACGAATGTGGCATCGAAGA
EST: gi|29689542|gb|CB685817.1|CB685817
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88969719|gb|CI383222.1|CI383222
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86431204|gb|CI083627.1|CI083627
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86540265|gb|CI180471.1|CI180471
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86537269|gb|CI177475.1|CI177475
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88460326|gb|CI529401.1|CI529401
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86869490|gb|CI346350.1|CI346350
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|55431380|gb|CV728703.1|CV728703
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88996732|gb|CI389398.1|CI389398
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|29680417|gb|CB676692.1|CB676692
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTC
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTC
EST: gi|94362581|gb|CI052700.1|CI052700
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88415866|gb|CI536020.1|CI536020
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86853597|gb|CI330448.1|CI330448
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86839303|gb|CI331553.1|CI331553
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88374897|gb|CI520963.1|CI520963
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|87022144|gb|CI259216.1|CI259216
EST:     CTGCTTGCAAACCCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACC-AGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86535655|gb|CI175861.1|CI175861
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86878292|gb|CI319571.1|CI319571
EST:     CTGCTTCCAAACCAGTGGAACAAAGGATGGGGCGAT                         GATGGTTACTTCAAAATCATAAGGGCCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86433995|gb|CI094338.1|CI094338
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88216143|gb|CI215992.1|CI215992
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88833829|gb|CI077310.1|CI077310
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86870930|gb|CI326751.1|CI326751
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88290080|gb|CI547717.1|CI547717
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88259488|gb|CI363781.1|CI363781
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|33656188|gb|CF278802.1|CF278802
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|29666315|gb|CB662590.1|CB662590
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|89193799|gb|CI018117.1|CI018117
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|29658207|gb|CB654482.1|CB654482
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88275261|gb|CI395865.1|CI395865
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86540276|gb|CI180482.1|CI180482
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86887633|gb|CI311916.1|CI311916
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88276000|gb|CI396604.1|CI396604
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86860519|gb|CI323441.1|CI323441
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86863143|gb|CI344875.1|CI344875
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|58031395|gb|CX728938.1|CX728938
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88250173|gb|CI250450.1|CI250450
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86427759|gb|CI072856.1|CI072856
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86843379|gb|CI341454.1|CI341454
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GGTGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|89198824|gb|CI003561.1|CI003561
EST:     CTGCTTGCAAACCAGTGGAACGGAGGATGGGGCGAC                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|29686790|gb|CB683065.1|CB683065
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86430781|gb|CI083204.1|CI083204
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86537065|gb|CI177271.1|CI177271
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACATACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88987851|gb|CI017940.1|CI017940
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86251465|gb|CI055598.1|CI055598
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86528070|gb|CI168276.1|CI168276
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86600729|gb|CI356486.1|CI356486
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAAACGAATCTGGCATCGAAGA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCAC-AAACGAATGTGGCATCGAAGA
EST: gi|29639549|gb|CB644558.1|CB644558
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88274639|gb|CI395045.1|CI395045
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86884529|gb|CI337097.1|CI337097
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88276419|gb|CI397023.1|CI397023
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86528093|gb|CI168299.1|CI168299
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88986013|gb|CI033342.1|CI033342
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|33654657|gb|CF277271.1|CF277271
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|58610249|gb|CK038121.1|CK038121
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTC-AAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGA
EST: gi|88446618|gb|CI536649.1|CI536649
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86428106|gb|CI073203.1|CI073203
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86838435|gb|CI327787.1|CI327787
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|18388303|gb|BM421501.1|BM421501
EST:     CTGCTTGCGAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGAGTCATAAGGGGCACAAACGAATGTGGCATCGAAGA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGA-TCATAAGGGGCACAAACGAATGTGGCATCGAAGA
EST: gi|88830222|gb|CI076478.1|CI076478
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86838331|gb|CI327712.1|CI327712
EST:     CTGCTTTCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|86911254|gb|CI317602.1|CI317602
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|87030805|gb|CI362019.1|CI362019
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GGTGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88275798|gb|CI396402.1|CI396402
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
EST: gi|88966702|gb|CI365925.1|CI365925
EST:     CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT                         GATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA
genomic: CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtcctt ... atactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATgtaagtccttggcaaatatataagttcaataagtgaaatgttgcataatttgtattttttgagctattaataatgtttggtcggtgatactggtag

- - - - - -  AGTGGA
- - - - - - - - - -  AGAGGA
- - - - - - - - - - - GAGGAT
- - - - - - - - - - -  AGGATG