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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCAATCAAGGATGGTTGTGCCCATGAGACAAGTAGCAGCAGTGGACATTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgcttctaacaagtcctactactgaagtaactcagtagcccaagtaatcagtataagttcagtgtttggataaatgtgatgaatttgactttagc...

Basic information

species Oryza sativa
transcript LOC_Os04g58750.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88273501|gb|CI393907.1|CI393907
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|88277700|gb|CI398502.1|CI398502
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|86482095|gb|CI124728.1|CI124728
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|27410209|gb|CA923279.1|CA923279
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|88223137|gb|CI222986.1|CI222986
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|88447419|gb|CI544293.1|CI544293
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|88476120|gb|CI413391.1|CI413391
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|88280916|gb|CI400435.1|CI400435
EST:     TTGGATATGACTGAACCAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|33675770|gb|CF304009.1|CF304009
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTTGGTGTGAACAATCATTGGACATGGAAGC
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTT-GGTGTGAACAATCATTGGACATGGAAGC
EST: gi|29636566|gb|CB641575.1|CB641575
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|87005460|gb|CI285682.1|CI285682
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTCGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|88479558|gb|CI416829.1|CI416829
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|88469813|gb|CI407084.1|CI407084
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|86884457|gb|CI337025.1|CI337025
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: gi|33679197|gb|CF307436.1|CF307436
EST:     TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCAT
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCAT
EST: gi|86834784|gb|CI345868.1|CI345868
EST:     TGAATATGACTGAACAAATTTGTAGTTCAGAAAAGTGCACATAACTTCAG                         GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTCTTGTTCATTTG
genomic: TGAATATGACTGAACAAATTTGTAGTTCAGAAAA-TGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG