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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAGgtaagccatattcagaacaagatatatcactaaatgccctaatgtacacctatggtgctttctcaaacagttcccccatgttgatataatacgcactaaggcactaagcacattcaaaacaatttctaagtacagacagcttctcatatttgttttctgacgctcttatatttcctttctaatttgcag

Basic information

species Oryza sativa
transcript LOC_Os04g56480.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g56480.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G044011_T02 (Zea mays), 5'ss of exon 11
GCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAGgtaagccatattcagaacaagatatatcactaaatgccctaatgtacacctatggtgctttctcaaacagttcccccatgttgatataatacgcactaaggcactaagcacattcaaaacaatttctaagtacagacagcttctcatatttgttttctgacgctcttatatttcctttctaatttgcag
||||||  | |||||||||||||| |  ||| |||||||| |||| |||||||||||||| || || ||||||||||| |  | |   ||  | | |  |||||| ||   ||||| ||    |   |   | | | ||| |    |  ||   |  | |||| |  | ||||                                                                                         
GCATAGTTTAAAGGAAGTTTTGGACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactgactataaatcacacacgtcactagatatactaatttatgtatg-agctttctttaaaataacaacaacaaagtcttttaatcccaagtaagt----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89182762|gb|CI114131.1|CI114131
EST:     ATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAG                         GTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAAT
genomic: ATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAGgtaagccata ... taatttgcagGTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAAT
EST: gi|88224189|gb|CI224038.1|CI224038
EST:     ATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAG                         GTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAAT
genomic: ATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAGgtaagccata ... taatttgcagGTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAAT
EST: gi|86505661|gb|CI148294.1|CI148294
EST:     ATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAG                         GTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAAT
genomic: ATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAGgtaagccata ... taatttgcagGTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAAT
EST: gi|87006648|gb|CI295031.1|CI295031
EST:     ATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAG                         GTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAATGA
genomic: ATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAGgtaagccata ... taatttgcagGTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAATGA
EST: gi|88227542|gb|CI227022.1|CI227022
EST:     AGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAG                         GTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAAT
genomic: AGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAGgtaagccata ... taatttgcagGTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAAT
EST: gi|86854586|gb|CI258879.1|CI258879
EST:     ATAGCCCAAGTGTGATGACCCTAATAAAAGATACAAAGGCGGCGCAGGAG                         GTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAAT
genomic: ATAGCCCAAGTGTGATGACACTAATAAAAGATACAAAGGCGGCGCAGGAGgtaagccata ... taatttgcagGTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAAT