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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAGGGGAGTTCCCCAATCAGAATCCACGTATCCACGAGGGCTTAGCTACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgctactacgatgcatctgtgtaactttcttcggttcacgactgggaatattgttgttaactatacactgcatctgcag

Basic information

species Oryza sativa
transcript LOC_Os04g40040.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g40040.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G147884_T03 (Zea mays), 5'ss of exon 9
CTGGAGGGGAGTTCCCCAATCAGAATCCACGTATCCACGAGGGCTTAGCTACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtat-------------acttgctactacgatgcatctgtgtaactttcttcggttcacgactgg-gaatattgttgttaactatacactgcatctgcag
||||||||||||| ||||| |||||||| || ||||| |||||  |  | || ||||||||||| |||||||| ||||||||||| |||||||||||||||||              | |||||  || || | || || | |    | ||| | | ||  ||    || | || |   |||  |   ||||||||||||
CTGGAGGGGAGTTTCCCAACCAGAATCCTCGCATCCATGAGGGTCTGCCAACATGGGTCAAGAATGATAGGCCTCTGGAGGAAACCGACATTGTTCTCTGgtacttcataacagaccatttgctgttatgaagaatttg-gaactgctgttcagattacatcttacaaaaactgataa-aaccttgttctgcatctgcag

upper sequence: LOC_Os04g40040.1 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 10
CTGGAGGGGAGTTCCCCAATCAGAATCCACGTATCCACGAGGGCTTAGCTACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgt-----atacttgctactacgatgcatctgt-gtaactttcttcggttcacgactgggaatattgttgttaactataca--ctgcatctgcag------
|||| |||||||| || ||||||||||||||| |    ||||| || ||||| ||||| ||| || || | || |||||||||||||| || ||||||||||     | |  |   |  |   |  |||| |  | |   |       |||   |  | ||| || ||  |  ||| | |     ||| | |        
CTGGTGGGGAGTTTCCTAATCAGAATCCACGTGTTGGTGAGGGATTGGCTACATGGGTTAAGCAGAATCGTCCTCTGGAGGAAACTGATATAGTTCTCTGgttggttaaaactatcatcatattcaatctatcatgatgctggatttctcatacccagaaattttatttcttcctaaaaaagtgacattttctacttgac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89180882|gb|CI044965.1|CI044965
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86481940|gb|CI124573.1|CI124573
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86491563|gb|CI134196.1|CI134196
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|14571357|gb|BI118725.1|BI118725
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|89194500|gb|CI116937.1|CI116937
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88221322|gb|CI221278.1|CI221278
EST:     ACCTGGTTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGGCTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|89182221|gb|CI113590.1|CI113590
EST:     AACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: AACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88439052|gb|CI551903.1|CI551903
EST:     GGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: GGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|58652700|gb|CK041380.1|CK041380
EST:     GAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: GAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|87032740|gb|CI270375.1|CI270375
EST:     ACCTGGGTCAAGAAGGATAGGCCCNTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88247722|gb|CI247571.1|CI247571
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|58653590|gb|CK042270.1|CK042270
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86603813|gb|CI114587.1|CI114587
EST:     GGCCCCCGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: GGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86491853|gb|CI134486.1|CI134486
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|58671535|gb|CK060221.1|CK060221
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|29663381|gb|CB659656.1|CB659656
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|87016691|gb|CI275693.1|CI275693
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86430039|gb|CI082462.1|CI082462
EST:     CCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: CCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86414256|gb|CI068659.1|CI068659
EST:     GGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: GGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86597754|gb|CI274745.1|CI274745
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATAT-CCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|33795935|gb|CF323835.1|CF323835
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATTCCCAAGGCTGGAGGACTGGCCTGTCA
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATA-TCCCAAGGCTGGAGGACTGGCCTGTCA
EST: gi|86592986|gb|CI270543.1|CI270543
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88991168|gb|CI108555.1|CI108555
EST:     ATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88965812|gb|CI006656.1|CI006656
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86596922|gb|CI270718.1|CI270718
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|29673127|gb|CB669402.1|CB669402
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86854704|gb|CI258995.1|CI258995
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|27577624|gb|CB000319.1|CB000319
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86478701|gb|CI121334.1|CI121334
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86507346|gb|CI149979.1|CI149979
EST:     ACCTGGGTCAAGAAGGATAAGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88833171|gb|CI076654.1|CI076654
EST:     ACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|25803373|gb|CA759334.1|CA759334
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTNTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|14571287|gb|BI118655.1|BI118655
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|58673835|gb|CK062521.1|CK062521
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88244917|gb|CI242768.1|CI242768
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|87018139|gb|CI275953.1|CI275953
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|9866161|gb|AU101911.1|AU101911
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGNTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|87037871|gb|CI192493.1|CI192493
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88993495|gb|CI110316.1|CI110316
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|29675869|gb|CB672144.1|CB672144
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|29665205|gb|CB661480.1|CB661480
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88830909|gb|CI079343.1|CI079343
EST:     GAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCATCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: GAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88247638|gb|CI247487.1|CI247487
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|87027803|gb|CI274367.1|CI274367
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86435995|gb|CI107228.1|CI107228
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|29624652|gb|CB629663.1|CB629663
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|218489922|gb|FG967500.1|FG967500
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGG
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGG
EST: gi|88239926|gb|CI239088.1|CI239088
EST:     AACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: AACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88955760|gb|CI092049.1|CI092049
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|89195766|gb|CI007185.1|CI007185
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86428092|gb|CI073189.1|CI073189
EST:     ACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86521183|gb|CI161389.1|CI161389
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86493992|gb|CI136625.1|CI136625
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GAATGTGTTTGGGCTCACCCAAATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|89174304|gb|CI110502.1|CI110502
EST:     GGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: GGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88198565|gb|CI198415.1|CI198415
EST:     ACCTGGGTCAAGAAGGATAGGCCNCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88966393|gb|CI119528.1|CI119528
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|87020838|gb|CI269555.1|CI269555
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|33812564|gb|CF332170.1|CF332170
EST:     ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|88202505|gb|CI200860.1|CI200860
EST:     ACCTGGTTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
EST: gi|86479656|gb|CI122289.1|CI122289
EST:     ACCTGGGTCAAGAAGTATAGGCCGCTGGAGGAAACTGACATTGTTCTCTG                         GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT
genomic: ACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 74 (downstream exon)
Score: 2

CTGGAGGGGAGTTCCCCAATCAGAATCCACGTATCCACGAGGGCTTAGCTACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgc ... gcatctgcagGTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGGAGGGGAGTTCCCCAATCAGAATCCACGTATCCACGAGGGCTTAGCTACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgtatacttgctactacgatgcatctgtgtaactttcttcggttcacgactgggaatattgttgttaactatacactgcatctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA