1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCGTGGTTACCTCCCAGTGACAACATACAGCTGCCACTACTTCTTAGATCCTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatttgaatattttcagtaagtttttttatgagctgttaattcttctatgcatctgaagccatcctttatgctcagtcctttgtatgtcggata...
species | Oryza sativa |
transcript | LOC_Os04g36062.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|88490730|gb|CI428002.1|CI428002
genomic: GGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|88515215|gb|CI442869.1|CI442869
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|88478249|gb|CI415520.1|CI415520
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|88835151|gb|CI370454.1|CI370454
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|86903334|gb|CI313697.1|CI313697
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATTTTATTAA-GTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|88469583|gb|CI406854.1|CI406854
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|88520955|gb|CI448609.1|CI448609
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|88548156|gb|CI477074.1|CI477074
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|38480777|gb|CF964866.1|CF964866
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: TGGTTTTTGGGGCAGCTATAGGAAATTATCTTGCACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|88479544|gb|CI416815.1|CI416815
genomic: TGG-TTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|86493201|gb|CI135834.1|CI135834
genomic: CAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGCAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACCAAGGAAGAEST: gi|8856634|gb|AU093952.1|AU093952
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATA-CAAGGAAGA
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|88273265|gb|CI388721.1|CI388721
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|88225239|gb|CI225155.1|CI225155
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATEST: gi|44676323|gb|CR289757.1|CR289757
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
EST: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAG GTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
genomic: CTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatt ... taaatgtcagGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTGGTTACCTCCCAGTGACAACATACAGCTGCCACTACTTCTTAGATCCTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGgtatttcatttgaatattttcagtaagtttttttatgagctgttaattcttctatgcatctgaagccatcctttatgctcagtcctttgtatgtcggata
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