1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GACATTGAAGGAGAAGATCAAGGAGTACAACAAGAGAGACGCCAAGTTCTACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaatctgccactattgagcgtcttccggccacacttacctcagctcagatgcgcttgtttctcaccattgttgcttgttgaactgctgcag
species | Oryza sativa |
transcript | LOC_Os04g28420.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|218489779|gb|FG969223.1|FG969223
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|3762939|gb|AU029691.1|AU029691
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTNCCTGGGAAGCAGGAGGCACANCCTATGGCCATTGACAGTNCCGCTEST: gi|86506588|gb|CI149221.1|CI149221
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|89163178|gb|CI100068.1|CI100068
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|2312019|gb|C28174.1|C28174
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|86484135|gb|CI126768.1|CI126768
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATCGACAGTGCCGCTEST: gi|86528735|gb|CI168941.1|CI168941
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|86485367|gb|CI128000.1|CI128000
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|89181155|gb|CI045238.1|CI045238
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|88258090|gb|CI360676.1|CI360676
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|89184352|gb|CI046917.1|CI046917
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|86535436|gb|CI175642.1|CI175642
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: CATGTTCGCGAAATGGAGGAAGCTGGTACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|86528371|gb|CI168577.1|CI168577
genomic: CATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|86832739|gb|CI345153.1|CI345153
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|88849661|gb|CI089767.1|CI089767
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|15847220|gb|BI795496.1|BI795496
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: CGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACACTGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGT-CCGCTEST: gi|86427218|gb|CI072315.1|CI072315
genomic: CGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACA-TGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG --G-TGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|8527213|gb|AU092028.1|AU092028
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|88989314|gb|CI043813.1|CI043813
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|88907936|gb|CI090532.1|CI090532
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|10794673|gb|AU108639.1|AU108639
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCTEST: gi|86483317|gb|CI125950.1|CI125950
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
EST: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAG AAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
genomic: ACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaat ... actgctgcagAAGGTGCCTGGGAAGCAGGAGGCACAGCCTATGGCCATTGACAGTGCCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATTGAAGGAGAAGATCAAGGAGTACAACAAGAGAGACGCCAAGTTCTACGGCAACATGTTCGCGAAATGGAGGAAGCTGGAACACATGGAGAACAAGgtaggttaatctgccactattgagcgtcttccggccacacttacctcagctcagatgcgcttgtttctcaccattgttgcttgttgaactgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA