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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGCTGTTCTGGTCATGGTAAAAATGGTTCACTTTCTGTCCTTCAACAATCTATCCGTCCTGATTTAATTACTGAGgtaaatattttttcatttaccattggtattttgagtacttgcaatctttttgggaagttgcaaattctttatcagtttgttttattattagcttgctcgt...

Basic information

species Oryza sativa
transcript LOC_Os04g18010.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g18010.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA16G32890.1 (Glycine max), 5'ss of exon 13
GTGTGCTGTTCTGGTCATGGTAAAAATGGTTCACTTTCTGTCCTTCAACAATCTATCCGTCCTGATTTAATTACTGAGgtaaatattt---tttcatttaccattggtattttgagtacttgcaatctttttgggaagttgcaaattctttatcagtttgttttattattagcttgctcgt
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GTGTGCTGTTCTGGTCATGGAAAAAATGGTTCTCTTTGTGTTTTGCGGCAATCAATTCGCCCAGAAGTGATTACTGAGgtttgtccatgattttcattggcgggacatgttt-aaatatatttaatatgtttaatca-tgatgcttatgttataaaataatttttaagttcatctttaca-