1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACGTTGTGCTGCTGGTTTCAGCATGATGATACTGCCTGCAAAAAAGCTGCTCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttatatttccttcatatacatcttgttaagttaaaacatcaatactctgtaaataaaatatgaaatgaaaaaaaaaataacttctagtgttagcc...
species | Oryza sativa |
transcript | LOC_Os04g04020.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTTTCAATG GAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAGEST: gi|58590900|gb|CF989208.1|CF989208
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAG
EST: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATG GAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAGEST: gi|88265583|gb|CI376485.1|CI376485
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAG
EST: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATG GAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAGEST: gi|86874758|gb|CI325269.1|CI325269
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAG
EST: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATG GAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTCCCACTAACCATCCAGEST: gi|87027452|gb|CI272217.1|CI272217
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAG
EST: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATG GAACCAGAGAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAGEST: gi|88255805|gb|CI353676.1|CI353676
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAG
EST: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATG GAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAGEST: gi|86866837|gb|CI343188.1|CI343188
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAG
EST: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATG GAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAGEST: gi|86889315|gb|CI317115.1|CI317115
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAG
EST: TCAATTTTATTTATCCTTCATTCTACAGGGTTGATGAAGTATTGTCAATG GAACCAGATAGAATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAGEST: gi|218496502|gb|FG956556.1|FG956556
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAG
EST: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATG GAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAGEST: gi|88970089|gb|CI383591.1|CI383591
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAG
EST: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATG GAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAGEST: gi|58689436|gb|CK078123.1|CK078123
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGGATCGGTGGATCCTTGAAGCGGTTGCCACTAACCATGCAG
EST: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATG GAACCAGATAGG
genomic: TCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttata ... aattttccagGAACCAGATAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGTTGTGCTGCTGGTTTCAGCATGATGATACTGCCTGCAAAAAAGCTGCTCAATTTTATTTATCCTTCATTGTACAGGGTTGATGAAGTATTGTCAATGgtatgttatatttccttcatatacatcttgttaagttaaaacatcaatactctgtaaataaaatatgaaatgaaaaaaaaaataacttctagtgttagcc
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